KEGG   Capsella rubella (pink shepherd's-purse): 17890645
Entry
17890645          CDS       T02984                                 
Name
(RefSeq) geranylgeranyl pyrophosphate synthase 10, mitochondrial isoform X1
  KO
K13789  geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
Organism
crb  Capsella rubella (pink shepherd's-purse)
Pathway
crb00900  Terpenoid backbone biosynthesis
crb01100  Metabolic pathways
crb01110  Biosynthesis of secondary metabolites
Module
crb_M00366  C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:crb00001]
 09100 Metabolism
  09109 Metabolism of terpenoids and polyketides
   00900 Terpenoid backbone biosynthesis
    17890645
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:crb01006]
    17890645
Enzymes [BR:crb01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.1  dimethylallyltranstransferase
     17890645
    2.5.1.10  (2E,6E)-farnesyl diphosphate synthase
     17890645
    2.5.1.29  geranylgeranyl diphosphate synthase
     17890645
Prenyltransferases [BR:crb01006]
 Terpene biosynthesis
  Prenyl diphosphate synthase
   17890645
SSDB
Motif
Pfam: polyprenyl_synt UbiA
Other DBs
NCBI-GeneID: 17890645
NCBI-ProteinID: XP_006298024
UniProt: R0G5U4
Position
Unknown
AA seq 353 aa
MDTREALVYTLISFLLSFQLVFWRFRPRCTKVMSTLRLTRHVNIRPLNSPKSYKFEFMSY
MVNKAKSVNKALEEAVPLREPVLKIHEAMRYTLLSDGKRVRPMLCLAACELVGGHESTAM
SVACGMEMLHASSLILDDLPCMDDDCLRRGKPTNHMVFGEGISILASDALIALAVQKAAT
STLLDVPPERVLRAVKEMVKAVGTEGLVAGQAADLAGEGMGFDSNTALEHLEFIHIHKTA
ALLEAAAVTGAIMGGGSDKEIEKLRSYARCIGLMFQVVDDVLDVTKSSEELGKTAGKDLI
AGKLTYPRLMGVEKSKEYAERLNREAREHLQGFDSDKVAPLLSLADYVLNRKN
NT seq 1062 nt   +upstreamnt  +downstreamnt
atggatactcgagaagctcttgtttacactctcatctccttcctcctctctttccaactc
gttttttggagattccggccacgttgcactaaagttatgtctacgttgaggctcacacgc
cacgttaacatccgccctctgaactcgcccaaaagctataagtttgagttcatgtcgtat
atggtcaataaggctaagtcagttaataaagcactagaggaggccgttcctctccgcgag
ccagtactcaagatccatgaggccatgaggtacacgcttctctcggatggcaaacgcgta
cgaccaatgctttgcttagctgcatgcgagctcgtgggcggacatgagtcaaccgcaatg
tccgttgcctgtggcatggagatgcttcacgcgtcgtctctcatcctagacgacctccct
tgcatggacgacgactgtctccggcgtggaaaacccactaaccatatggtctttggagaa
ggtatatccatattagcttctgatgcgctcatagctttggctgtccaaaaggccgcgaca
tcaaccttgttggacgttcctccagagagggttctcagggccgttaaggagatggtgaaa
gcagtggggacggaggggcttgttgcaggtcaagccgcggatttggctggagaaggtatg
ggatttgatagtaacaccgcactagaacatcttgagtttatacatattcataaaacggcg
gcgttgctcgaagcggcagccgttacgggagctataatgggaggtgggtctgataaagaa
atagagaagcttaggagttacgcaagatgcattgggttgatgtttcaggtggtggatgat
gtacttgatgtgaccaagtcgtcggaagagctagggaaaaccgccggtaaagatttgata
gccggaaagctaacgtatccgagactgatgggagtggagaaatcgaaggaatatgcagag
agactgaacagagaagcgcgggaacatcttcaagggtttgattcagacaaggtggctcct
ttgttgtctctcgctgattacgttctcaacagaaaaaactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (6)   
   KEGG ENZYME (3)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (30)   

Download RDF
DBGET integrated database retrieval system