KEGG   Corynebacterium resistens: CRES_1625
Entry
CRES_1625         CDS       T01538                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
crd  Corynebacterium resistens
Pathway
crd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CRES_1625 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:crd03400]
    CRES_1625 (mfd)
Enzymes [BR:crd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CRES_1625 (mfd)
DNA repair and recombination proteins [BR:crd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      CRES_1625 (mfd)
SSDB
Motif
Pfam: DEAD UvrB_inter Helicase_C TRCF CarD_TRCF_RID ResIII AAA_22 UB2H LSDAT_prok RecG_dom3_C
Other DBs
NCBI-ProteinID: AEI09978
UniProt: F8E0I8
Position
complement(1937211..1940978)
AA seq 1255 aa
MSSKTPDSPSLKNAPALSGLLKAVSQDSKLRGVVAHIGDKTLHMQGPEGVWPFAVGAVAS
QAPVLVVTATGRQAQDLAEMLKAMVGDSVELFPAWETLPHERLSPGVETVATRMRVLRRL
RTGLGGDAKSGRTQPPSELKIVVASARAVLQPVQQHLGNIEPIRLAEGQEITFDELPERL
VELGYTHVDVVAKRGHFAIRGGIVDIFPASEELPVRVDFWGDEVSEVRAFSVGDQRTIPN
LEPGTVTVYPCRELLLTDEVREKAAALAQEHAGNAELAELFDKISQKIAVQGMEALIPAL
RTSELVTLPELMPEGTHTIVTTPAAVKRRAVDLAETGKQFMEAGWEVAAMGGSMPLDGVA
YLSLEGLQQVQVKLGRPWWTMSPVGVADYGEADSTDNAGGAVLDDDVLTLDYAPASTPRG
DMEAIGAVMSDIRKRVESGGRVAFAAPTPAVAARMVRRFKEAGIAVEPIGVDLTGSRGLG
RLPKPKHTTADEPAPHQVSIYHAVCHQGLDFPFAGDDKHSSLLFLTETDLTGNRVDAKAT
GKRKPAKKRNRVDPLALEPGDLVVHDSHGIGKFVRMEERTIGKGADASRREYLVLEYAPS
KRGGPGDQLYVPMDQLDMLSRYVGGEKPALSKMGGADWKNTKRKARGAVRQIAGELVQLY
ATRQAAPGYAFGADTPWQREMEEAFPYTETEDQFNAIEAVKADMEKPVPMDRVIVGDVGY
GKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHLNTFTERMQDFPTTIRELSRFTSPAES
REVIKAMANGDVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKSLRTHVDVL
TMSATPIPRTLEMSMAGIREMSTILTPPQDRHPVLTYVGQQEDKHVAAAIRRELLRDGQV
FYVHNRVKTIERAAADLRRLVPEARVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVE
TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSHERGYAYFLYPPGEVLTETSYDRLTT
IAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADG
KVVDGTEEEKKEIRIDLPVDAHIPVEYVASERLRLEAYRKFAAAEDVAEIAKVLEELRDR
YGQPGPEIHMLAALSRLRLLCRDLKVTEVVAVGSKISFSPIQLEDSGQVRLKRLFPAANY
RATTKVVLIPAPKKGAGMRAVALREMELVQWVADALTQLAGLPSRDMSGAEPASG
NT seq 3768 nt   +upstreamnt  +downstreamnt
atgagttccaagacccccgattcaccttcgctgaaaaacgcccccgcgctctctggcctg
ctcaaagccgtcagccaggactcgaaactgcgcggggtagtggcgcacatcggggacaaa
actcttcacatgcaaggcccagaaggcgtgtggccattcgccgtgggcgcggttgccagc
caagcgccggttctcgtggtgaccgcgacgggtcgccaagcgcaagacctcgcggaaatg
ctcaaggccatggtgggggattccgtcgagttattcccagcgtgggaaacccttccgcac
gaacgtctttcgcccggcgtggagaccgtcgccactcgtatgcgcgtgctgcgtcgcttg
cgtactggtttggggggtgacgccaaatcgggccgaacccaacccccatctgaactgaag
attgtggttgcatccgcccgtgcggtgctgcagccggtgcagcagcacctaggcaatatc
gaacccatccggcttgcggaggggcaagaaatcactttcgatgagctgcccgaacgtctg
gtggagcttgggtatacgcacgtggatgttgtcgcgaagcgtggccacttcgccatccgt
ggtggcatcgtggatatcttccccgcctccgaggaactaccagtccgcgtggatttctgg
ggtgatgaagtctcggaagttcgcgcgttcagtgtgggggatcagcgcaccatccccaac
ctcgaacccggcaccgttacggtatacccgtgccgcgagctcctgctgacggacgaagtc
cgcgaaaaagctgccgccttggctcaagagcacgcgggcaatgctgagctagcggaatta
ttcgacaagatcagtcagaagatcgccgtgcaaggcatggaagccctgatcccagctctg
cgcacttccgaactcgtcacattgccggagctgatgcccgagggcactcatacaatcgta
accactccagcagcggttaaacgccgcgcagttgaccttgcagaaaccggtaagcaattc
atggaagccgggtgggaagttgctgccatgggtggatccatgccactggacggcgtggcc
tacctctcccttgaagggttgcagcaggtccaagtgaagcttggccggccgtggtggacg
atgtcgcccgtgggtgtggcggactacggcgaagcggattcgacagataacgctggtggg
gcagtgctcgacgacgatgtgttgacgctggactacgcacccgcctcaacacctcgtggc
gatatggaagcgattggcgctgtcatgtccgatatccgcaagcgagtggaatccgggggt
cgtgtagctttcgccgctcccactccagccgtggctgcccgcatggtgcgtcgcttcaag
gaggctggaatcgcggtcgaacccattggcgtcgacctcacaggatcccgcgggctaggt
cgcctgccaaaaccaaagcacacgacggcagacgagccggccccgcatcaagtcagcatc
tatcacgcggtgtgccaccagggcctcgattttccattcgcaggcgatgacaagcactcc
agcttgttgttcctgactgaaacggatctaaccggtaaccgtgtggacgccaaagccact
ggtaaacgtaagcccgcgaagaaacgcaaccgggtggatccgctggccttggagccgggg
gatctggtggtccacgattcccacggcatcggaaaattcgtccgcatggaagaacgcacg
attgggaaaggtgcggatgcctcccgccgtgaataccttgtgctggaatatgcgcccagc
aagcgcggaggccccggcgatcagctgtacgtgcctatggatcagctcgacatgctctcg
cggtatgtcggcggtgagaagcccgcgctttccaagatgggtggggcagactggaaaaac
accaagcgcaaggcccgcggtgctgtccggcaaatcgccggtgaacttgtgcagttgtac
gccacccgccaagccgcgccggggtatgccttcggcgcggatacgccatggcagcgcgag
atggaggaggccttcccctacacggagactgaggatcagttcaacgcgatcgaggcagtc
aaggcggatatggaaaagccggtgccgatggatcgagtgatcgtcggcgatgtaggttac
ggcaaaactgaggtcgccgttcgtgcggcgttcaaagcagtgcaatcgggcaagcaagtt
gcagtattggtgccaaccacgttgctggcgcagcagcacctcaataccttcacggaacgc
atgcaggatttccctacgacgattcgcgagctttcgcgtttcacctcgccagcggaatcc
cgcgaagtcattaaggcgatggcaaatggcgatgtcgatatcgttattggcacgcaccgc
ctgctgcaaaccggcatccaatggaagaacttgggcctagtcatcgttgatgaggagcag
cgctttggcgtcgaacacaaagaacacatcaaatcgttgcgcacgcatgttgatgtgctg
acgatgtccgctacgccgattccgcgcaccttggaaatgtccatggcagggattcgcgaa
atgtccaccatcctcacgccaccgcaggatcgccaccccgtgttgacttacgtggggcag
caagaggataagcatgtggccgcggctattcggcgcgaactgttgcgcgatgggcaggtc
ttctatgttcacaaccgcgtgaaaacgattgaacgtgctgcggccgaccttcgccggttg
gttcccgaggctcgagtggtggtggctcacgggcagatgagcgaagagcagctggaaacc
accgtgaaggggttctgggatcgcgagttcgacgtgctggtgtgcaccacaatcgtggag
acgggcctggatatcgcaaatgccaacacactcatcgtggaaaatgctcaccacatgggc
ctttctcagctacaccagttgcgcgggcgagtgggccgttcccatgagcgcggatatgcc
tacttcctatacccacctggggaagtgctgaccgaaacctcgtatgaccggttgacgacc
attgcgcagaacaatgatctgggtgcgggtatggccgtggcaatgaaggacttggagatg
cgcggtgccggcaacgtgctcggtgcggaacaatccggccatatcgctggcgtgggattc
gatctgtatgtacgcctcgtgggcgaggccgtggaagctttccgcgccatggccgatggc
aaggtggtcgacggcacggaggaagaaaagaaggaaatccgcatcgacttgcctgttgat
gcccatattccggtggaatacgtggctagtgagaggctgcgactggaggcttaccggaag
ttcgccgccgcagaggatgtcgcggagatcgctaaggtccttgaagaactgcgggaccgc
tatggccagcccggcccagaaatccacatgttggctgcactttcgcgtctgcgactgtta
tgccgcgatctcaaggtcaccgaggtggtggctgtgggatctaagatcagcttcagcccg
attcagctagaggactctggccaggtgcgcctgaagcggttgttccctgcagccaattac
cgcgcaaccaccaaggtggtgttgattcccgcgccaaagaagggggcgggcatgcgtgcg
gttgcgctacgagagatggaacttgtgcagtgggttgccgatgcgttgacgcaattggct
ggattgccttcacgcgatatgagtggagctgagcccgcgagcgggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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