KEGG   Crassostrea gigas (Pacific oyster): 105318560
Entry
105318560         CDS       T03920                                 
Name
(RefSeq) RNA-binding protein 28 isoform X1
  KO
K14573  nucleolar protein 4
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    105318560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:crg03009]
    105318560
Ribosome biogenesis [BR:crg03009]
 Eukaryotic type
  Pre-60S particles
   Other pre-60S particles
    105318560
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_occluded MARF1_RRM1 BUD22
Other DBs
NCBI-GeneID: 105318560
NCBI-ProteinID: XP_034331030
Position
LG5:28002273..28012889
AA seq 842 aa
MAANKPGEHVERKSKTLFVRNLPFSVTNEKFEALFSEVGPVRTCFVVKDKDSQKSKGFGY
VTYSMFEDAEAAVSKIMSLDGRRLFVQFANKKKKEKRKPKVKVEENTEEESDEDSDEEKP
PQYPRIAEVEAQRTHSQQELKYLRAKTLVIQGWSSDHSQTDVEDVMAKLNVKNIAKIKFP
APDRQPPCALVRFKSIRDTNRALRKIDGKEVKGCTLKACQLSKESAVPVTPSSKPKNTAR
KARLIIRNLSFKCSEEKLKETFEKFGEVTEVQIPKLKNGKVQGFGIVQFKEVDDASKAMA
EMNAKPILNRPVAVDWTIPKDKYEAKMFKTQRDDDLKETDEKEVNGEEKPNKKTSKPENS
VSNQKKKIKREESSEESDLEEESESEEDSEMEEVKGENSESEEESENEDSDDDDDDDDES
SESEDDTTAKKGKRNVHHKNDVGEGRTLFIRNVPFDIDEESLEDEFSEFGKINYVKIVVN
PKTGQPKGTAFVQFKTQKEAEKFRSAAEDNDEGIVIDGRRLVVMEALDRQKAQALSGQKE
KVKEDKRNLHLVREGMIRPGTQSAIGLSKEDLLKRTKLENAKRAKLKNPNIFVSTTRLSV
HNIPTQVTDNQLKTMFLKAADSKAAVITECRIMRDSDGNNKKKLGKSRGFAFVNFSCHQH
ALNALKNTNSNADLFGENKRLIVEFSLENKAALEAKEKRLERHKARLESLKKAKEKKSPT
ESTEESKSKKQQKSQGSKIVDKFIGSLPVKEDVKKLPKGLPSHWGPKVRHKPRPAVTTTN
KKSKNQPAKRKWEEPKNASGQQVKTTKPKKRKTDSVDDFDRLVNKYKQNMLTKSDKSKWF
DR
NT seq 2529 nt   +upstreamnt  +downstreamnt
atggctgccaataaacctggtgaacatgtggagaggaaatcaaaaacactttttgtacga
aatttgccgttttcggttacaaatgaaaaattcgaagcattattcagtgaagtggggccg
gtcagaacgtgttttgttgtgaaagataaagattctcagaagagtaaaggttttggctat
gttacatattccatgtttgaagatgccgaagcagcggtatcaaaaatcatgtcacttgat
ggaaggagactttttgtgcaatttgcaaataaaaagaaaaaagagaagaggaagccaaaa
gtaaaggtcgaagaaaacacagaggaggaatcggatgaggacagtgatgaggagaaacca
ccacagtatcctcgtattgctgaagttgaggcacaaaggacccacagtcagcaggagttg
aagtatcttcgagctaagactctggttatccaaggctggtcctctgatcactcccagaca
gatgtggaggatgtcatggcaaaactgaatgtgaagaacattgccaagatcaagtttccg
gcccccgaccgacagcccccctgtgcattggtacggttcaaatccatcagagacacgaac
agggcactccgaaagatagatggaaaggaagtcaaaggatgtacactgaaggcttgtcag
ctcagtaaggaatctgctgttcctgttacaccatccagtaaacccaagaacacagccagg
aaggccaggcttataatcagaaatctctcatttaagtgttctgaagagaagttgaaggaa
acctttgaaaagtttggggaagttacagaagtgcaaattccaaaattgaaaaatggaaaa
gtgcaagggtttggaattgttcagtttaaggaggtagacgatgcatctaaggcgatggca
gagatgaatgcaaaaccaattttaaatcgcccagtagcagtggattggaccattcctaag
gacaagtatgaagcaaaaatgtttaaaacacagcgtgacgatgatctcaaagagacagat
gaaaaggaagtgaatggagaagaaaaaccaaacaagaaaacatctaaaccggaaaatagt
gtctcgaaccagaaaaaaaagataaagagagaagaaagcagtgaggaatcagatttggaa
gaagagagtgaaagtgaagaggattctgaaatggaagaagtaaagggagaaaactctgag
tctgaagaagagtctgaaaatgaggactcagatgatgatgatgatgatgatgatgagagt
tcagagagtgaggatgacacaactgcaaagaagggcaaaagaaatgttcaccacaaaaat
gatgttggggagggcaggacattgtttatacgaaatgtgccatttgacatcgatgaagag
agtttagaagatgaattttcagaatttggaaaaattaactatgtgaagatagtggtcaat
cctaaaacaggacaacccaaaggtacagcttttgtacaattcaagactcaaaaagaggca
gaaaaattccgatcagcggcagaggacaatgatgaaggaatagtaattgatggaagaaga
ctagttgtcatggaggcattagacagacagaaggcacaggcactgtcaggtcaaaaggaa
aaggtcaaagaggacaagagaaacctgcatctagtgcgagaaggaatgattcgacctgga
acacagtcagctataggactctccaaggaagacctactcaagaggacaaagctggagaat
gcgaagcgggccaagttaaagaaccccaacatctttgtatcgaccacccgtcttagtgta
cacaacattcctacacaggtgacggacaaccagcttaagacgatgttcctaaaggccgcc
gacagcaaagcagcagtaatcacagagtgtcgtattatgcgggattcagacggaaacaat
aaaaagaagctgggaaagtctcgaggtttcgcctttgttaatttctcctgtcatcagcat
gccctgaatgctttgaaaaacaccaacagcaatgcagacttgtttggggagaataagaga
ttgatagttgaattttccctggaaaacaaagcggcattagaagcaaaagaaaaacgcttg
gaaagacataaggcacgtttggagtctttgaaaaaagcaaaagaaaagaagtctcccaca
gagtcaacagaggaatcgaagtcgaagaagcagcagaaatcccaaggttcaaagatcgtg
gacaagtttataggatctttacctgtcaaagaggatgttaagaaactacctaagggtctt
ccctcccactgggggcccaaagtccggcacaaacctcgaccagctgtgactacaaccaac
aaaaagtccaagaatcagccggccaaacggaaatgggaggagccaaagaatgcatcggga
caacaggtgaaaacaacgaaacccaagaaaaggaaaacagatagtgtggatgactttgat
agactggtcaacaagtataaacagaatatgttgacaaaatcggacaaatccaaatggttc
gaccggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (98)   
   KEGG ORTHOLOGY (1)   
   RefGene (94)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (111)   

Download RDF
DBGET integrated database retrieval system