KEGG   Crassostrea gigas (Pacific oyster): 105325676
Entry
105325676         CDS       T03920                                 
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56-like
  KO
K12026  tripartite motif-containing protein 56 [EC:2.3.2.27]
Organism
crg  Crassostrea gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:crg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:crg04121]
    105325676
Enzymes [BR:crg01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105325676
Ubiquitin system [BR:crg04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    105325676
SSDB
Motif
Pfam: zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 zf-C3HC4_4 zf-B_box DUF3583 zf-RING_5 zf-RING_2 Enterotoxin_b zf-ANAPC11 Prok-RING_4 YkyA Helicase_IV_N
Other DBs
NCBI-GeneID: 105325676
NCBI-ProteinID: XP_011423640
Position
LG5:complement(26579877..26583274)
AA seq 403 aa
MELASKSIQSNFLTCFLCSKLYEEPTTLQCLHSFCKKCILKNIQQQTSDVTKKCPVCQET
IDENLEEKNTNMLLKNRVVFLKEQAKNLSNPICALCRLKFQKSTMAVAQCISCLDYLCEV
CSNFHNMTTLTINHQVMSLTEIKSGKYDDAILSIRFKTFCPKHPDEEIKFCCIPCHTLTC
IHCLILGHKGHEYKTLDMLKEDKVKVAKNVFHKLNEKLKSLNRSKDSMESAQNQLKTQRK
TIESKIRKKSYEALSRINKRRDKMLKDLEDLYLPKSKGLTIEINKIAARCKIIKQALQYA
ECMSKGMSVDVVLSVDELIKRLENLAEDDDGKFKIAGINTEMSNITLKVTKPLELLLGSA
ERFWKEMERKCGSPQDDNSSDFICSFADKSTQTSEVDFGICHG
NT seq 1212 nt   +upstreamnt  +downstreamnt
atggagctggcgtcaaagtctatacaatcaaatttcttgacatgttttctttgttcgaaa
ttatacgaagaaccaacaacattgcaatgtttacattcgttctgcaagaagtgtatcctg
aaaaatattcagcagcaaacctctgacgttaccaagaaatgcccagtttgccaagaaaca
attgatgaaaacctggaagaaaaaaacacaaatatgctcttgaaaaaccgagtagtgttc
ttaaaagaacaggccaagaatttatcaaatcctatttgtgcactatgtagactcaaattt
cagaaaagtacaatggcagttgcacaatgcattagttgtttggattatctgtgtgaagta
tgttcaaattttcacaatatgacaactttaacgataaatcatcaggtgatgtcactgaca
gaaataaagtcagggaagtatgatgacgcaatcttgtctatcaggtttaaaacgttttgt
cctaaacatccggacgaagaaataaagttctgttgtataccgtgtcatactttgacatgt
attcattgtttgatacttggacataaggggcacgaatataagactctggatatgttaaaa
gaagataaagtaaaagttgcaaagaacgttttccacaaactgaacgaaaagttgaaatca
ttaaatcgaagtaaagattcgatggaatccgcacagaaccaacttaaaacacaaagaaaa
accatagagagcaaaattagaaaaaagagttacgaagccctgagtagaattaacaaaaga
agagacaaaatgttaaaggatctagaggatttatatttaccaaagtcgaaaggccttaca
atcgagattaacaagatagctgctcgatgtaaaataataaaacaagctttgcaatatgca
gaatgtatgtctaaaggtatgagtgttgatgtagttttatcagtagatgaactgataaaa
aggctggagaatcttgcagaagatgatgatggaaaattcaaaattgcaggtataaacaca
gaaatgtcaaacataactctgaaagtaactaagccccttgaactgttactaggtagtgct
gaacgtttctggaaggaaatggaaagaaaatgtggttctccacaagatgataattcgtct
gactttatttgttcatttgctgataaatccacccaaacttcagaagtagattttggaata
tgtcatgggtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (47)   

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