KEGG   Crassostrea gigas (Pacific oyster): 105329085
Entry
105329085         CDS       T03920                                 
Name
(RefSeq) high mobility group-T protein
  KO
K10802  high mobility group protein B1
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg03410  Base excision repair
crg04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    105329085
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    105329085
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:crg03036]
    105329085
   03400 DNA repair and recombination proteins [BR:crg03400]
    105329085
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:crg04147]
    105329085
Chromosome and associated proteins [BR:crg03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    105329085
DNA repair and recombination proteins [BR:crg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     105329085
   MMR (mismatch excision repair)
    Other MMR factors
     105329085
Exosome [BR:crg04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   105329085
SSDB
Motif
Pfam: HMG_box_2 HMG_box FTCD_C HMG_box_5
Other DBs
NCBI-GeneID: 105329085
NCBI-ProteinID: XP_011428545
UniProt: K1RFU8
Position
LG7:7562918..7565815
AA seq 201 aa
MGRKDGKPRGRMSSYAFFVQTCREEHKKKCPDENVVFAEFTKKCAQKWKEMSAKEKRRFE
EMAERDKSRYEKDMANYDPPAGGATGKRKKRAKDPNAPKRALSAFFFFCGDERPDVRAAH
PEWSVAEVAKELGKRWEKVTNRSKFEARAEADKARYAKEMEAYRGGGSVPKASPAKKAKP
QPKESDEDDDEEEEDDEDDDE
NT seq 606 nt   +upstreamnt  +downstreamnt
atgggaagaaaggatggcaaaccaagaggacgcatgtcgtcgtatgcattttttgtgcaa
acctgccgtgaagagcacaagaagaagtgtccagatgaaaatgtagtttttgctgaattc
accaaaaagtgtgctcagaaatggaaagaaatgagtgccaaggaaaagagaaggtttgaa
gagatggctgagagagacaagtctagatatgagaaagacatggccaactatgatccccct
gccggtggagccacaggaaagaggaagaagagagcaaaggatccaaatgcacccaagaga
gccttgtctgcattctttttcttttgcggtgatgagcgcccagacgtgagagcagcacat
cctgaatggtctgtggcagaggttgccaaggaactgggaaagaggtgggagaaggtcacc
aacagatccaagttcgaggccagagccgaggcggacaaggcaagatatgcaaaggaaatg
gaggcttatagaggaggtggatcagttcccaaagcttctccagccaagaaagccaaacct
cagcctaaagaaagtgatgaagatgatgatgaagaggaagaagatgatgaagatgatgac
gagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (109)   
   KEGG ORTHOLOGY (1)   
   RefGene (105)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (133)   

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