KEGG   Crassostrea gigas (Pacific oyster): 105331906
Entry
105331906         CDS       T03920                                 
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 30 isoform X1
  KO
K11851  ubiquitin carboxyl-terminal hydrolase 30 [EC:3.4.19.12]
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg04137  Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:crg00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    105331906
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:crg01002]
    105331906
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:crg04131]
    105331906
   04121 Ubiquitin system [BR:crg04121]
    105331906
Enzymes [BR:crg01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     105331906
Peptidases and inhibitors [BR:crg01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   105331906
Membrane trafficking [BR:crg04131]
 Autophagy
  Mitophagy
   Other mitophagy associated  proteins
    105331906
Ubiquitin system [BR:crg04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    105331906
SSDB
Motif
Pfam: UCH UCH_1
Other DBs
NCBI-GeneID: 105331906
NCBI-ProteinID: XP_034336604
Position
LG6:50841927..50850086
AA seq 595 aa
MDRKYWLFGGITAAVISGAYVFWTSSSKSNKKKAAKGFSLASLLFSTPKDVKPCTEEGGI
AEEETKEKTPLCIVPAASSQPPTSLLAQAVNSESSKSESILEVECIYPAASAQPPTSSLA
QAANSESIKSESILEVECIYPAASAQPPTSTLAQALLEVEYIRKDRCPGLENLGNTCFLN
SVLQGLASCSRVRLWLSDYVNSGHLQTPSLTRTLNDVIKVLNNETEFYDDVHSPDYVFNT
LLIKGWCISPEEQDAHEMFHVLTQTITEETMSYPGVVPLFENPDVGFRENDRALSRIESP
LPLLPERPMDHPFQGLLASQLECMECGYKNPVRYDHFDSLSLTFPQSVWVDRSLETLLYH
YISVDTVSNVDCVGCSKLKQRPAGCKMPLKKTTFKKKMTIGKLPQSLVFHIQRCQWLNDG
SACKRQDFVSFPEILDMSNYVYHKVAAKESKKGVLGGGQQFLFGASSEPRAESFESAPSV
TLLRTLNYDNRRTQNGLFIQPQMEDHSRDSDVNHNGPASVSKSSDSSLTYRLCAVVVHIG
NISSGHFITYRRSPNTVRGKRRTDKWLCCSDRKVVPANKMDVLAAEAYMLMYERL
NT seq 1788 nt   +upstreamnt  +downstreamnt
atggatagaaagtattggttatttggtggcattacagctgcagtcatatcaggtgcatat
gtcttctggacttcatctagtaaatcaaacaagaaaaaagctgcaaaggggttctcctta
gcatcccttctgttcagcactcctaaagatgttaaaccttgcacagaagaaggaggaatt
gctgaagaggagaccaaagaaaaaactcctctctgtatagtaccagctgcctcatcacag
cctcccacctcattacttgcccaagcagttaactccgagtcctccaaatcagaatcaatt
ttggaagttgaatgcatttatccagctgcctcagcacagcctcccacctcatcacttgcc
caagcagctaactccgagtccattaaatcagaatcaattttggaagttgaatgcatttat
ccagctgcctcagcacagcctcccacctcaacacttgcccaagcacttttggaagttgaa
tacattcgtaaagatcgatgcccgggactggaaaatctgggtaatacctgctttctgaac
tcagtgctccaagggctggcctcatgttcgagagtaaggctctggctgtctgactatgtg
aacagtgggcatctgcagaccccctctctcaccaggacacttaatgatgtcatcaaagtg
ttgaacaatgagacagaattttatgatgatgttcatagcccagattatgtgttcaacaca
ttgttaatcaaaggatggtgcatctctcctgaagaacaggatgcacatgaaatgtttcat
gtattgactcagacaatcacagaagagaccatgagttacccgggagttgtccccttgttc
gagaacccagatgttgggtttcgggagaatgaccgagctttgtccagaatcgagagtcca
ctccccctcctgcctgagcgccccatggaccacccattccaaggcttgctagccagtcag
ctggagtgtatggaatgtggctacaagaatccagtcagatacgaccatttcgacagtctt
tccttgacatttcctcaaagtgtctgggtggatcgcagtctggagaccctgctttatcac
tatatcagtgttgatacagtgagtaatgtggattgtgtgggatgtagcaaactaaaacaa
aggcctgctgggtgcaaaatgccactcaagaagacaaccttcaagaaaaaaatgaccatt
ggaaagctcccacaatccctggtctttcacatccagaggtgccaatggctgaatgatgga
tcagcttgcaagagacaagattttgtctcattcccagaaatcctggacatgagtaactat
gtgtaccataaagtagctgccaaggaatccaagaaaggtgtacttggaggtggccaacag
ttcctctttggagctagcagtgaacctagagctgagagttttgaatctgcaccttctgtt
acactcttaagaacactgaactatgataacaggagaacacagaacggcttgttcatccag
cctcagatggaggatcatagccgggattcagacgtcaatcacaacggcccggccagtgtc
agtaaatcctccgactcctcgctcacttacagactctgtgcggtggtggtgcacattggc
aatatctcgtctggacactttataacctaccgccgcagtcctaacacagtgaggggcaag
cgccgcacagacaagtggctgtgttgttcggacagaaaggttgtaccagccaataagatg
gatgtgttagcagcagaggcttacatgctgatgtatgagaggctctaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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