KEGG   Crassostrea gigas (Pacific oyster): 105344597
Entry
105344597         CDS       T03920                                 
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
  KO
K14327  regulator of nonsense transcripts 2
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg03013  Nucleocytoplasmic transport
crg03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    105344597
   03015 mRNA surveillance pathway
    105344597
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crg03019]
    105344597
Messenger RNA biogenesis [BR:crg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     105344597
   mRNA cycle factors
    P-body specific factors
     105344597
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 105344597
NCBI-ProteinID: XP_034307017
Position
LG8:4656332..4699521
AA seq 1393 aa
MSDSRESERGSSGKPRGPEKSSSGGPYRGQDRPSSGKPRPDSSRRYDDRPQKSPYKTSSS
SPSKGNSSGFDTKKGVSKSQSDSGYNERGGNSKRGGDSRSGGGARGDKWSQKGEKDSTKP
LGKAPPPADKSGKKIGKEDRPSDEKGDKREDKKHSKEVKSAAELEEQWQSEDEKKRKAEE
EAKRIEEEKIRKEEEEQRRKEEEQKRLLEEEIKTVKDYQQECQERYDTKRKLRERNQEAA
ENRPDESFFSRLDSSLKKNTAFVKKLKNLTESQKESLTKDFNGLNLNKYIGEAAAAITEA
KLKMSDIACGVHICCLFFQRYSDFSNSLMENWQKYLLSKKDEKFSEEKSRNMSGRQSSGN
QKNKITNPSKYRVDLRFFAELLSVGLFNLGKGLNVLAGQLSFLTLGDKEEHNNLTILTSF
CKHCGDDYAGLLPRKIRLLAEKHGVEIPRSTLLPPERQKGCRNLLGEYYQSLCKHLLMDH
KELKNMERQNRRILQTKGELSAERKETFDTLLQTYQKLLANTAVFADLLDEDLPELPEDE
IKRDDDTGFDIFNPETSAEFQYTGDSTLFEDEDARSFYETLPDLKAFIPGICYKDSEQSG
TKDGSKDDITSLDEDMESLQIEDVEREMETEKQIAEVESKEAEQQEQEEVLEDYGMLPDA
DGTLKPSKEDTDTGSLMKMQYEAYIQTLPNSVNKDLIDKAAVEFCMNFNTKSNRKKLVRA
LFTVHRTRYDLLPFYSRFVATLYPCMPDVASDLVQLLKGDFRWHVRKKDQINIESKLKTV
RFIGELVKFKLFPKSEALHCLKMLMFDFSHHNIEMACALLDSCGRFLYRSQDSHHRTKIY
LDVMMRKKSALHLESRYTTMIENAFYYSNPPETQQSAQKIRPPMHEYIRKLLYKDLSKVT
TEKVLRQMRRLPWDDPEIAFYATKCLIAVWNVRYNSIHCAANLLAGLAPYHEHIAIQVVD
GVLEDIRLGMEVNHPKYNQRRVSGVKYLGELYNYRMLESAVVFKTLYSFITFGVVMDDSG
VSPLDPPEHLFRIRLVCVLLETCGTYFDKGSSKKKLDCFLAYFQRYYWFKRSNPIYTEAR
PFPVDVENLMIDTMECIRPKMRLHPNYEEACKAVEELENEYKQKVASVLTIIETDQEGSA
SETEEGLGTIQEAEEYGEDLSLSGLDESETSQEETSQSQRSTEDQGEEGGESCNEEDDED
VMESAGENEEDDQLTIMKGGPKHIKCSEDEDFMTAFDKMMTENIQARTNESLKVPQLDIA
VPMNLKDKSKKTVSVNLYPMKEEEVPKEEDRSIEFVLMTRRGNRQHFTNLNVPISEEFAT
KYREREQAEKAEKEKMKQVVLGIHERQEEEDYQEMIASLNRVMPVNTNRERRVRYQHPKG
APDADLIFGSKKR
NT seq 4182 nt   +upstreamnt  +downstreamnt
atgagtgattcccgagaatcagaaagaggatcctccggtaaaccaaggggtcccgagaag
tcctccagtggaggtccatacaggggacaagacagaccgtcttcaggaaaacctcggcct
gactcctcaaggcgttatgatgacagaccccagaaatctccctacaaaacctcatcttca
tcaccttctaagggaaacagttcaggctttgacaccaaaaaaggagtgagtaaaagtcag
tctgattctggatacaatgagaggggaggaaactccaaaaggggaggcgactccagatca
ggaggtggtgcaaggggagacaaatggtctcagaaaggagagaaagattcgaccaaacct
ttaggaaaggctccacctcctgcagataagagtggcaaaaaaatcggtaaagaagacagg
ccatcagatgagaagggagataagcgtgaggataagaagcactccaaggaggtcaaatct
gccgcggaactggaggaacagtggcagagtgaagatgaaaagaagaggaaggctgaggag
gaggcaaagaggatagaggaggagaagatcaggaaggaggaagaggaacagagaaggaaa
gaagaagaacagaaaaggttactggaagaagaaattaaaactgtgaaggattaccaacag
gaatgtcaggaaagatacgacacaaagagaaaattacgggaaagaaaccaagaggctgca
gaaaatcgcccagacgaatccttcttcagtagattggactctagccttaagaagaacacg
gcttttgtgaaaaaactgaaaaatttaacagaatcacagaaggagagtttgacaaaagac
ttcaatggcttgaacttgaacaagtacataggagaggcagccgcagccattacagaggcg
aagctgaagatgtcggacatagcctgtggggtccacatctgttgtctgttcttccagcgc
tactccgacttctccaactctctgatggaaaactggcagaaatacctactgagcaagaag
gatgaaaagttctcggaggaaaaatcgaggaatatgtcgggtagacagagttctggtaat
caaaagaacaagataaccaaccccagcaagtacagggtggacttgcgcttcttcgccgag
ttgctgtcggtggggctgtttaacctgggtaagggactaaacgtcctggctggtcagctc
agcttcctgaccctgggggacaaggaagaacacaacaacctgaccatactgaccagcttc
tgtaagcactgcggggacgactacgctggcctgctgcccaggaaaatcaggttgttggct
gagaaacatggagtagaaatcccacgtagcacactgctgccgccagagagacagaagggg
tgccgtaacttactgggggaatactaccagtccctgtgtaaacacctactgatggaccac
aaggagctcaaaaacatggagagacagaacagacgcatcctacagaccaaaggagagcta
agcgcagaaaggaaagaaacctttgacacactgttacagacgtatcagaagcttctggcc
aacaccgcagtctttgccgacctgttggatgaagatttgcctgagttacccgaggatgaa
atcaagcgagatgacgacacaggttttgacattttcaaccccgaaacaagtgctgagttc
cagtacacaggggacagtactctgtttgaagacgaagatgccaggtccttctacgagact
ctacctgatctcaaggcgttcatccccgggatttgctacaaggacagtgaacagtctgga
accaaggacggcagtaaggatgacatcacctctctagatgaagatatggagagcctacag
atagaggatgtggagagagagatggagacggagaaacagattgctgaagttgagagtaaa
gaggcggagcagcaggaacaggaagaggtactggaggattatgggatgcttccagacgca
gatggtactttaaaaccaagcaaagaggatactgacacagggagtctaatgaagatgcag
tatgaagcttacatccagacattacctaacagtgtcaacaaggacctcattgacaaggct
gcggtcgagttttgtatgaacttcaacactaagagtaacaggaaaaagttggtgagggca
ctgttcacggtccatcgcaccaggtatgacctgctgccattctactcacgctttgtggcc
accctgtacccttgtatgccagacgtggccagtgatctggtgcagctccttaaaggagac
ttcagatggcatgtacgcaagaaggatcaaatcaacattgagtccaagttaaaaacagtg
agattcataggggaactggtcaagttcaaactgtttccaaagtctgaagcacttcactgc
cttaagatgctgatgttcgacttttcacatcacaatatagagatggcatgtgctctgttg
gactcatgtggacgatttctgtatagatcccaggactcacaccacaggaccaaaatctat
ctggacgtgatgatgaggaagaagtcggccttgcacctggagagtcgctacaccactatg
atagagaatgccttctactacagcaatccccctgagacccagcagtccgcccagaagatc
cggccccccatgcacgagtacatacgcaaactgctgtacaaggacctgtccaaagtcacc
acagaaaaggtgctgcgacagatgaggagacttccgtgggacgatccagagatagcattc
tatgccaccaagtgtctgattgccgtctggaatgtccgatacaactccattcactgcgct
gccaatctattggccggtctggcaccctaccatgaacacatagctatccaggtggtggac
ggggtgctagaagacatcaggctgggtatggaggtgaatcaccccaagtacaaccagcgg
cgtgtgagcggagtcaagtacctgggggagctgtacaattaccgcatgctggagtcggcc
gtcgtcttcaagacactctactccttcatcaccttcggcgtcgttatggatgatagcggc
gtctcccccttggaccccccggagcacctgttccgtatccgcctggtctgtgtgctgctg
gagacctgcgggacctactttgacaagggctccagtaagaagaagctcgactgcttcctg
gcatacttccagcgttactactggttcaagaggagtaaccctatatacaccgaggcccgc
cccttccctgtggacgttgagaacctgatgattgacaccatggagtgtatacgacccaaa
atgaggctccacccgaactacgaggaggcatgcaaggctgtggaggagctagaaaatgag
tacaaacagaaagttgcgtcagtgttgaccatcatagagacggaccaggagggcagtgct
agtgagacggaggagggactgggcaccatccaggaggcagaggaatacggggaggatctg
agtttgagtggactggacgagagtgagacgagtcaggaggagacgagtcagagtcagagg
agcactgaggaccagggagaggagggaggcgagagctgtaatgaggaagatgacgaggat
gtgatggagagtgcgggcgagaatgaagaggatgaccagttgacaatcatgaagggtgga
cctaagcacatcaaatgtagtgaggatgaagatttcatgacggcctttgataaaatgatg
accgagaacattcaggctcgtaccaacgaatccttgaaggtgcctcagctggacattgct
gtacccatgaacctcaaagacaagagcaagaaaacagtgagtgtcaatttgtatcccatg
aaagaagaggaagtgccaaaggaagaggaccggtctattgagtttgttctgatgaccagg
cgagggaacaggcagcattttaccaatctgaatgttccaatatcagaagaatttgctacc
aaatacagagaaagagagcaggcagaaaaggcagagaaagagaagatgaagcaggtggtg
ctaggaatccatgagagacaggaagaggaggattaccaagagatgatagcgtccttgaat
cgtgtgatgccggtgaacactaaccgagagaggagggtgaggtaccagcaccctaagggc
gccccggacgccgacctcatctttggatccaaaaaaagatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (104)   
   KEGG ORTHOLOGY (1)   
   RefGene (100)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (2)   
   Pfam (2)   
All databases (123)   

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