KEGG   Crassostrea gigas (Pacific oyster): 105346921
Entry
105346921         CDS       T03920                                 
Name
(RefSeq) TNF receptor-associated factor 6-B
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg04120  Ubiquitin mediated proteolysis
crg04140  Autophagy - animal
crg04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    105346921
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    105346921
   04140 Autophagy - animal
    105346921
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:crg04131]
    105346921
   04121 Ubiquitin system [BR:crg04121]
    105346921
Enzymes [BR:crg01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105346921
Membrane trafficking [BR:crg04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    105346921
Ubiquitin system [BR:crg04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    105346921
SSDB
Motif
Pfam: zf-TRAF zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 zf-C3HC4_4 zf-Nse zf-RING_2 zf-RING_5 zf-TRAF_2 TRAF3_RING zf-C3HC4_3 Sina_ZnF WipA_N TRAFD1-XIAF1_ZnF TRAF2_zf zf_UBZ
Other DBs
NCBI-GeneID: 105346921
NCBI-ProteinID: XP_011454006
UniProt: K1QS25
Position
LG10:50823017..50827651
AA seq 282 aa
MSNRRRNQVTAPTESPRSYDAAFCSDLDRKYLCPVCLSALHEPMQTSCGHRFCKTCIQGV
INGRANAKCPVDNVVFKCNDELFEDKAFQREVLSQTVKCGNHDKGCTWTGELRSYQEHDA
RCQYVSVHCENNCGLRIPRHQLTDHADVCERRPVDCQHCNSQIPFTDLTKHQVLACQNLP
VQCTLCGQAGIRRKDISAHIDITTGDCPLTVIPCQYASFGCQFQDKRRDMVEHYREAANH
HILLLVRKISDQEQRISALEREVHLIQQEQEDQKQTLQQVQP
NT seq 849 nt   +upstreamnt  +downstreamnt
atgtcaaacagaagaagaaatcaggtgaccgctcccactgagagcccgcggagctatgat
gctgcgttctgctcggatcttgaccggaagtacctctgccccgtctgtttgtccgccctc
catgaaccaatgcagacttcctgtggacaccggttctgtaaaacctgcattcagggtgtg
atcaatggaagagctaatgccaagtgcccagtggacaacgttgtattcaaatgtaatgac
gagctttttgaagataaggccttccagagagaggtgttgtctcaaacagtgaagtgtggt
aaccatgacaaaggctgcacgtggaccggagaactccgctcctatcaggagcatgacgct
cgatgccagtacgtctctgtccattgcgagaacaactgtggactgaggattccccgccac
cagctgacagaccatgcggacgtctgtgaacgccgtcctgtcgactgtcagcactgtaac
tcacagattcccttcactgacctcacgaagcaccaggtgctggcgtgccagaacttgcca
gtccagtgtactctgtgtggacaggctgggataagaaggaaggatatctccgcacatatc
gacatcaccactggtgactgccctctcactgtcatcccctgtcagtatgcctctttcggc
tgccaattccaggacaagcggcgtgacatggtggaacactacagagaggccgccaatcat
cacatcctgttgttggtccggaagatttccgaccaggagcagagaatctctgccttggag
agggaggtccacctaattcaacaggaacaggaggaccagaaacaaactcttcagcaggtt
cagccatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (64)   

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