KEGG   Camelina sativa (false flax): 104714194
Entry
104714194         CDS       T05044                                 
Name
(RefSeq) protein PAT1 homolog 1
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
csat  Camelina sativa (false flax)
Pathway
csat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104714194
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104714194
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104714194
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     104714194
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 104714194
NCBI-ProteinID: XP_010429781
Position
9:complement(35143751..35147785)
AA seq 800 aa
MDAFGIGSSINHAPVTDDLKKFGDNPTGNTMFDASQYAFFGNDVVEEVELGGLEEEDEIL
SFTGLGDDFSFDKEEVESSRSLSNVDDLATTFSKLNREPDVYRNTGPITDRRSVQNPLAA
EWTHGEALPSWYGRKILDSDAIKDDKVWSAQPFSSLDLVEQRNPDRTTLYPEPQRQLHQD
RNQQQFPSEPILVPKSSFVSYPPPGSISPDQRLGLPNIPYQSGGPQMGSPNFSSFPTLQP
QLPGMHHGSPQHAGNMPQFRPALPLNNRPPGQWMNHQNIHPGDGSGNMNNAMLQQPPHQN
GLMPPQMQGSQNRLPHPMQPPLGHMPGGQPQLFNSHLSRSSSSGNYDGALGFVDPREARP
GSGHGNRQNMRFHQQGYDGGVQRRYSGWPPFRSKYMSADEIENILRMQLVATHSNDPYVD
DYYHQACLAKKTAGAKLKHHFCPNHLRDLQQRARSNNEPHAFLQVDALGRVPFSSIRRPR
PLLEMDPPNSTKSGNAEHKATDKPLDQEPMLAARVYIEDGLCLLLEVDDIDRYLEFNQLP
DGGHQLKQRRQSLLDSLADSLQLADPLAKNGESRSHDDFLFLRIVSLPKGRKLLTRYLQL
IFPGSDLMRIVCMAIFRHLRSLFGVLSSDADIIKTTSKLAKVINLCINNMELGSVSVCLA
AVSCSSEQPPLRPLGSPVGDGASTVLKSILDRAAELIRANNFNNAVMALWRASFNEFFNL
VMKYCISKYESIMQSLNSQLPPHFAAEISDAATQAISREMPIELLRASFPHIDEQQKRIL
LEFIKGSMHGSQKTEPVLLG
NT seq 2403 nt   +upstreamnt  +downstreamnt
atggacgcttttggaattgggagtagtatcaatcatgctccagtaaccgacgatcttaag
aaatttggagataatcctacaggtaatacaatgtttgatgcatctcagtatgcctttttt
gggaatgatgttgtcgaggaggttgagcttggtggattggaagaggaagatgagatttta
tctttcactggattaggggatgacttttcatttgataaggaagaggttgaaagttctaga
tctctgtccaacgttgatgatcttgctactactttttcaaagttgaatagggagcctgat
gtctatagaaatacggggccaatcactgatagacgatcagtacagaatcctttagctgct
gagtggacccatggggaggcgttgccaagctggtacggccggaaaatactggactctgat
gccattaaagatgacaaggtgtggtcagcacagcctttttcatctttggaccttgttgag
cagagaaatcctgacagaacaacattgtatccggaaccacaacgtcaactgcatcaagac
cgtaatcaacaacagtttcccagcgaaccaattcttgtcccgaagtcatcttttgtttca
taccctcctccaggcagcatatcaccagatcagcggttaggactccctaatataccatat
cagtctggtgggcctcaaatgggatccccaaacttctcttcttttccaactttgcagcct
cagttgcctggcatgcatcatggatcaccgcagcatgctggaaacatgcctcagtttcgt
cctgctcttcctctaaataatcgccctccaggtcaatggatgaatcatcaaaatattcat
cctggggatggttccggtaacatgaataatgcgatgctacaacagccgcctcatcaaaac
ggtttgatgcctccacagatgcagggttctcagaataggttaccacatccgatgcagcct
cctcttgggcatatgcctggaggacagcctcagttgtttaactcccatctctctcgatca
tcatcctctggaaattatgatggagcccttgggtttgttgatccaagggaagcaagacca
ggatcaggtcatgggaacagacagaacatgcgttttcaccaacagggttatgatggtggc
gttcagagaagatatagtgggtggcctccgttccggtctaaatatatgtcagctgatgag
atagagaatatactgagaatgcagcttgttgctacacacagcaatgatccttacgttgat
gattactatcatcaagcctgtcttgctaagaaaactgctggtgcaaaattgaaacatcat
ttttgtccaaatcatttgagggacctccaacagcgtgcacggtcaaacaacgagccccat
gcttttcttcaggttgatgctcttggtagggttcctttctcttcaatccgcaggcctcgt
ccacttcttgaaatggaccctccaaattcaactaaatctggtaatgcggagcataaagct
accgataagccccttgatcaagaaccgatgcttgcagctagagtgtacatagaggatggt
ctttgtctcctccttgaagttgatgatatagatcgttacttagagtttaaccaactcccg
gacggaggacaccagttgaaacaaagacggcaatctttgttggatagcctcgcagattca
cttcagctcgctgatcccctagccaagaatggggaaagccggtctcatgatgattttctc
tttctaaggattgtctctcttccaaagggtcggaaactactcacaaggtatcttcagctt
attttccctggcagcgacctaatgcggatagtctgcatggccattttccgtcatttaaga
tcattgtttggagtcctctcatctgacgccgatatcatcaaaaccacaagcaagcttgcg
aaagttataaacttgtgcattaacaacatggagttaggatcggtaagcgtgtgtctagca
gcggtgtcttgttcttctgagcagccaccgctccgtcccttaggcagccctgttggagac
ggagcttccacggtactgaaatcaatactggacagagctgccgaacttatcagggcaaat
aatttcaacaacgcagtcatggctctatggcgcgcttcctttaacgagttctttaatctg
gtgatgaagtactgcataagcaaatacgagagcatcatgcagagtttgaattcacaattg
ccaccgcattttgcagcggagatatctgatgcagctacacaagccatttcccgcgaaatg
ccaattgagcttctacgtgcaagtttcccacacattgatgagcagcagaagagaatacta
ttggagtttatcaaagggtctatgcacggaagccagaaaaccgagccagtcttattaggt
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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