KEGG   Camelina sativa (false flax): 104739348
Entry
104739348         CDS       T05044                                 
Name
(RefSeq) probable NOT transcription complex subunit VIP2
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
csat  Camelina sativa (false flax)
Pathway
csat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104739348
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104739348
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104739348
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     104739348
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 104739348
NCBI-ProteinID: XP_010457970
Position
14:3222414..3226922
AA seq 614 aa
MSSLLNSSINGSTSNLSDGSGRTFTSSFSGQSGAASPVFHHAGSIQGLHNIHGNFNVPNM
AGSLGSRNPGLNGVPSAGVQQQNGSISNGRFASSNIPVALSQISHGSSHGHSGLTNRGGL
GVSPILGNAGSRMTSSMGNMVGGGTMGRTLSSGGGLSMPSLGSRLNLAVNSGSGNIGQNR
MMGGGVIPQGSPQVLSMLGNSYPTAGGLSQNHVQAMNSLSSMGLMNEMNSNDTSPFDINN
DFPQLTSRPSSASGQGQLGSRLKQGLGISPIVQQNQEFSIQNEDFPALPGYKGSNADYPM
DMHHKEQLHENSMLMMQSQQLSMGRSGGFNLDGAYASHRPQQQQHAQAVSSSGISLHGSD
IFSSSHPSYHSQTGGPPGIGLRSMNSANSVTGMGYDQQLIQQYQHQQNTSQYRLQQMSAV
SQPFRDVGLKSTQATQSSPDRFGLLGLLSVIKMTDPDLTSLALGIDLTTLGLNLNSTENL
HKTFGSPWSNEPSKGDPEFSVPQCYYAKSPPPLHPGLFAKLLVETLFYVFYSMPKDEAQL
YAANELYNRGWFYHKEHRLWFIRIGEPLVKTNAYERGSYHCFDPNSFDIVQKENFVLYYE
MLEKRPALSQDSQH
NT seq 1845 nt   +upstreamnt  +downstreamnt
atgtcaagtttacttaattcctcaattaacgggtctacctcgaacttgtcagacggttca
gggagaacgtttacttcttctttctctggtcagtctggggcagcgtctccggttttccac
catgctggatcgattcagggccttcacaacattcatggaaactttaatgttcccaatatg
gcgggttcccttggatcgagaaatccaggtttaaatggtgttccttctgctggtgtccaa
caacagaatggaagtatttcgaatggaagatttgcatccagcaatattccggttgcactc
tctcagatatctcatggtagctctcatggacactcaggactcactaataggggaggattg
ggagtttctccaattttgggaaatgcaggttctcgaatgactagttcaatgggaaatatg
gttggtggaggcacaatgggtaggactttgagctctggtggaggattatcgatgccgagt
cttggttcgcggctaaatttggcggttaatagcggttctggaaatattggacaaaatcgc
atgatgggtggtggagtcattccacaaggatctccgcaggttctttcgatgctgggaaac
tcttaccctacagctggagggctttcccaaaatcatgtgcaagcaatgaacagtctaagc
tctatgggattgatgaatgaaatgaactccaacgacacttctccatttgatataaataac
gattttcctcagctcacaagccgccccagctctgccagcggtcaaggacaattggggtct
cgattgaaacaaggccttggaatcagccccatagttcagcaaaaccaagagttcagcatc
caaaatgaagattttccagcattgccaggatataaaggtagtaatgctgattatccaatg
gatatgcatcataaagaacaactccatgagaattcaatgttaatgatgcaatctcaacaa
ttatctatgggaaggtctggtgggtttaacttagatggagcgtacgcctcacatcgtcct
caacaacaacaacatgctcaagctgttagtagtagtggtatctccttacatgggtctgac
atcttctcatcttcgcatccatcttaccattcacagactggtggaccaccgggtatcgga
ttaagatctatgaattctgcaaattctgtcactgggatgggttatgaccagcagcttatc
cagcaatatcagcaccaacagaacacgtcgcagtatcgcttgcagcagatgtcagctgtt
agccaacctttcagagatgtggggttaaaatcaacgcaggctacacagtcaagtcctgat
cggtttggcttgcttggtttgctaagtgtgataaagatgactgaccctgacttgacttct
ttggcacttgggattgatttgacaacactggggttaaatttgaactcaacagaaaatctt
cataagacttttggctcgccttggtccaatgaaccctctaaaggtgatccagaattcagt
gtaccgcagtgctactacgcaaaaagccctccacctctacatccagggctctttgcaaaa
ttattggtagaaactttgttttacgtattctatagcatgccgaaagatgaggcacaatta
tatgcggcaaatgaactttacaataggggttggttctaccacaaagagcacaggttgtgg
ttcattagaatcggggaacctctcgtgaaaacaaatgcgtatgaaagaggatcatatcac
tgttttgatccaaactcatttgatatcgttcaaaaggaaaattttgttctctattacgag
atgctggaaaaaagacccgccctatctcaagactctcaacattga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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