KEGG   Camelina sativa (false flax): 104766363
Entry
104766363         CDS       T05044                                 
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
  KO
K10875  DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
csat  Camelina sativa (false flax)
Pathway
csat03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    104766363
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csat03400]
    104766363
DNA repair and recombination proteins [BR:csat03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     104766363
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII Helicase_C_2 ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 104766363
NCBI-ProteinID: XP_010488536
Position
19:complement(14724598..14728594)
AA seq 1114 aa
MDMTTCVARRTRSRTESYLNSILNKSKGIAESEGTLNSRKGNKRGVSLRDACSPSPRKKK
RRLRKVSDDDDDDVEFVRTDYPEGKREGVDGDNVGSNSVGLESKSLDCGDRVCDFDLDDV
NLRGEEKTSNFDLDDDVVFVGTIPRENEHVEGYNVGSPRVCVVDSDLRGEEKGSTLNPLS
PDGDVVFIGTISGEKEHVEDGNVGSRVCDILLNDIKLKGSESDDVEGGSVEELGTDSGEE
FSGQDRDSGESDTDGEDADSDSSDYVVESSVSSYVDSSDGDFVCSEDEEGETTDVAAKEK
KSPSEKVRYHKKSRTSRRENNLNVFQLLAKSIWDGKKVLEDEICSGDETVDVDCRQDAIV
RESSSEKVNEEQGKPRRPRSLHRVKEKNHSKGESFVDGEKLCDGQEKIHCSTEDSPPLIL
RFGCEEPVLIEKTDEEKELDSLWEDMAVALTLEGMDSSTPAKVGDMLCSKERHDFVLEEE
IGLICRHCSHVAVEIKDISPAMDKYRANINDNKKSSEKKGEPLFDRLEFDASDHSSYPAS
LDNTEGTVWQYVPGIRDTLYPHQQEGFEFIWKNLAGTTKLDEFNSVGVKGSGGCIISHKA
GTGKTRLTIVFLQSYLERFPDSHPVVIAPATLMRTWEEECRKWNADIPFFNMNSRQFSGY
EDASAVSRLNGNRQHNSVRMVKLYSWWNKKSILGVSYPLYEKLAADKNAGEMQVFRRMLL
ELPGLLVLDEGHTPRNQNSLIWKVLTEVRTEKRIILSGTLFQNNFKELSNVLCLARPALK
DTISSRLQELSKRSQEGEHGRVNEEIGIVDLKVMIAPFVHVHEGTILEESLPGLKDCVVV
LNPPFQQKKILDRIDTSQNTFEFEHKLSAVSVHPSLYLCCNPTKKEDLVIGPATLGTLKR
LRLDYKEGVKTKFLINFIRITEKVKEKVLVYSQYIDTLKLIMDQLSAEFSWTEGEEILLM
HGKVEQRERQQLINNFNKQDSKSKVLLASTKACSEGISLVGASRVVFLDVVWNPSVESQA
ISRAYRIGQKRAVFVYHLMVKDTSEWDKYCKQSEKYRISELVFSSTNEKDKPINNEAVSE
DRILDEMVRLNKLKDIFEKILYNPKESDMFTSIF
NT seq 3345 nt   +upstreamnt  +downstreamnt
atggatatgactacttgtgttgctaggagaacccgttcgaggactgaatcttacttgaac
tcgattctgaataaatcgaaggggattgctgagtctgagggtactttaaattcgaggaag
gggaataagagaggagtgagcttgcgcgatgcttgttcaccgtctccgaggaagaagaaa
cggcggctgaggaaggtgagtgacgacgacgacgacgatgttgaatttgtcagaactgat
tatccagaaggtaagcgagaaggtgtggatggtgataatgttggttctaattctgtgggt
ttggaatcgaaatcgcttgattgtggtgatagggtttgtgattttgatttggatgatgtt
aatttgaggggtgaagagaaaacttctaattttgatttggatgatgatgttgtttttgtt
gggactatccctagagagaatgagcatgtagagggttacaatgttggttctcctagggta
tgtgtggttgatagtgatttgaggggtgaggagaaaggttctactttgaatcctttatct
ccggatggggatgttgtttttattggaactatctcgggagagaaggaacatgtcgaggat
ggcaatgttggttctagggtttgtgatattcttctgaatgatattaagttgaagggttct
gagtctgatgatgttgaaggaggttctgtggaggaattagggacggattcaggcgaggaa
tttagtggtcaagatagagattctggtgaaagtgatactgatggtgaagatgctgattct
gactcatctgattacgtggtggaaagttcagtttcttcttatgttgatagctctgatggt
gatttcgtttgttctgaggatgaagagggtgaaaccacagatgttgctgctaaagagaaa
aagagcccaagtgaaaaagtacgctaccataagaagtcgaggacttctcgtagggagaat
aacttgaatgtatttcagctgctagctaaatctatttgggatggaaagaaagttttggag
gatgagatctgctctggggacgaaaccgtggacgttgattgtagacaagatgctatagta
agggagagctcaagtgaaaaggtaaatgaagaacaggggaaaccaaggagaccgaggagt
ttgcatagggtaaaggagaagaaccactcgaagggtgagagctttgttgatggcgaaaaa
ctatgtgatggacaagagaaaatacactgctcgacagaagattcacctcctttaatcttg
agatttggctgcgaggagccggtgcttattgagaaaacagatgaggagaaagaattagac
agtttgtgggaagatatggccgttgctctaacattagaaggaatggactcatctactcct
gctaaagttggtgatatgttatgtagcaaagagaggcacgactttgtgctggaggaggaa
attggtttgatatgccgccactgttctcatgtggccgtcgagatcaaagacatctcacca
gctatggacaagtatcgtgctaatatcaatgacaataagaaatctagtgagaaaaagggt
gaacctttatttgataggcttgagtttgatgcttcagatcacagcagttatcccgcctct
ttggataatacagaaggaaccgtctggcaatacgtccctggcatcagagatactttgtac
ccacaccaacaagaaggctttgaatttatttggaagaacttagctgggacaacaaaactt
gatgagtttaacagcgtaggggttaagggaagcggtggatgcattatttctcataaggct
ggaactggtaagacacgcttgaccatcgtttttcttcagtcgtatttagaacggtttcca
gatagccatcctgtggtcatagctcctgcaactctaatgcgtacgtgggaagaagaatgc
aggaaatggaacgcagatattccattttttaacatgaatagtcggcagttctcagggtat
gaggacgcttcagctgtctcacgtttaaatggaaataggcaacataattccgtccgtatg
gttaagttatattcgtggtggaataagaaaagcattcttggagttagctaccctctgtat
gagaagctcgcggcagataagaacgctggagaaatgcaagtgtttaggaggatgttgcta
gaattgccggggttgctggtccttgacgaggggcacaccccgagaaaccagaatagtctc
atttggaaagtgcttactgaagtcagaacagaaaagcgtatcattctttcagggacactg
ttccagaataatttcaaggaactttcaaatgtcttatgcctggcaagaccagctttgaaa
gatacgatttcttcgaggttacaggaacttagcaagcggagccaagaaggcgaacatgga
agggtgaatgaagaaattggaattgtggatcttaaggttatgattgctccttttgtgcat
gtccacgaaggaaccatccttgaagaaagccttccaggtctaaaagactgtgttgtggtg
ttgaacccgccttttcaacagaagaaaattctggacagaattgatacttctcaaaacaca
tttgaatttgagcacaagctttcagctgtttcagtacacccatctctgtatttgtgctgc
aatccgacaaagaaggaagacttggttattgggccagcaacattaggaactctgaagagg
cttagacttgactacaaggaaggtgtgaaaacaaagttccttatcaacttcatccgcatc
actgaaaaagtgaaagagaaagtgttggtgtatagccaatacattgacactctaaagctg
atcatggatcagctcagtgcagaatttagctggactgaaggggaagaaattctcttaatg
catggtaaagttgaacaaagagagaggcagcaactgatcaacaacttcaacaaacaagac
agtaaatctaaagttctactggcatcaacaaaagcatgttctgagggtattagtcttgtt
ggcgcttcaagagttgtgtttcttgatgttgtttggaacccttctgttgaaagccaagcc
ataagtcgagcttacagaattggtcaaaagcgggctgtgttcgtttaccatctcatggtt
aaagatacatctgagtgggacaagtactgtaagcaaagtgagaaatatcgcatatctgaa
ctggtcttctcttctaccaatgagaaggataagccgattaacaacgaagctgtttctgaa
gatagaatcctcgacgagatggttcgactcaataagctgaaagacatctttgagaagata
ctttataatccaaaggagtctgacatgtttaccagcatcttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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