KEGG   Clostridium saccharobutylicum: CLSA_c01110
Entry
CLSA_c01110       CDS       T02876                                 
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
csb  Clostridium saccharobutylicum
Pathway
csb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:csb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CLSA_c01110 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csb03400]
    CLSA_c01110 (mfd)
Enzymes [BR:csb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CLSA_c01110 (mfd)
DNA repair and recombination proteins [BR:csb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      CLSA_c01110 (mfd)
SSDB
Motif
Pfam: UvrB_inter DEAD TRCF Helicase_C CarD_TRCF_RID ResIII SNF2-rel_dom RecG_dom3_C
Other DBs
NCBI-ProteinID: AGX41184
UniProt: U5MK40
Position
132940..136440
AA seq 1166 aa
MRLKGLLQPLESSEQFENIIKGIEAKRYPIGVYGTSESGRGYVIDSIFENIDKSMIIATQ
SDMEAKNLYEDLILYTNEVYYFPAKEMVFYNIDAISGDLRWARLKVINEILNKKKKIIVT
SIDSFAAKYTPHKLFVEYSMHLKENDEINIVEISKKLIQSGYERVEMVEGKGQFSLRGGI
LDVFPTCSTYPYRVELFGDEIESIRTFNIESQRSIEKVKKIDIFPAKEIIISEEALSLGR
DRLRDDFEKITSNDKDSERVDKLRKILNKNLESLEEKSSFETIDSYLPYFSETTESFFDY
FKDYFFVVNDVQRCKGKLESIYLEFEENFTAFSQRGDIFPRQGELLISKEEVFESFEGKN
IVFFESLTKANDWLKPFVTVNVSQVTLNNYQGQLDLLIDDILSKKSLGYKTLILSGTRAR
GERLVATLRDRGIESSYRDTIDDIQYGEVVITFGNQLKGFEYPEYKICLISDREVFGEAK
RKIKNKKSKKKGVSKIKSFAELKPGDYVVHANHGIGVYKGIKQIDVAGHKRDYLDIVYDK
GDKLYVPVEQLDLIQKYIGNEGKSPKVNKLGSAEWQKAKAKVRKSINEIAEDLVKLYAMR
TTVKGHKFSKDTEWQKQFEDEFPFEETPDQLTSLEEIKLDMECDKPMDRLLCGDVGYGKT
EVALRAAFKAVMDGKQVALLVPTTILAEQHYKNMKNRFSDFPIKIDMVSRFRTTKQQNET
LKKVKEGNVDILIGTHRLVSKDIQFKDLGLLIVDEEQRFGVKQKEKIKNIKKNIDVLTLS
ATPIPRTLHMSLSGVRDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRGGQVYFV
YNRVEDIERIAKYVQGLVPESKVGIAHGQMAERQLEKEMFDFMAGEYNVLVCTTIIETGM
DIQNVNTIIIYDSDKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKD
FTELGSGFKIAMRDLEIRGAGNMMGSSQHGHMASIGYDLYCRMLEDTVKLIKGEIQKEPV
ETTVDVKVDAFISENYIDDEIQKIEVYKKIAAIDGIEDYNDIKEELEDRYSKIPEPVYNL
MDIAYIKSQAKSIFIEEIKETPKEIIFRFAEGESEYKNIFKSLIEKYKDSVVLKFGLNPY
FAFKLKNIKMENKLEFLKNVFNDIIL
NT seq 3501 nt   +upstreamnt  +downstreamnt
atgagattgaaggggttattacagcccttggaaagtagtgaacaatttgaaaatattata
aaaggcattgaagcaaaaagatatcctattggtgtttatggaacatcagaatcaggaaga
ggatatgttatagatagtatttttgaaaatatagataaatctatgataattgctacccaa
agtgatatggaagcaaagaatctttatgaagatttaatattgtatactaatgaggtgtac
tactttccggctaaggaaatggttttctataatatagatgctatttcaggagatttaaga
tgggcaagactaaaagtaataaatgaaatattaaataaaaagaaaaaaataatagtaaca
tcaatagattcatttgcagctaaatatactccacataaattatttgtagagtatagcatg
catcttaaagaaaatgatgaaattaatattgtggagatatcaaaaaaattgattcaatca
ggatatgagagagtagaaatggttgaaggaaaaggccaattctcattaagaggtggaatc
ttagatgtgttcccaacatgttcaacttatccatatagagttgaactttttggtgatgaa
atagaatctattagaacatttaatatagaatctcaaagaagtattgagaaggtaaaaaaa
atagatatatttccagcaaaagagataattatatcagaagaagcattatctctcggtcgt
gatagattaagggatgactttgagaaaattacatcaaatgataaagatagtgaaagagta
gataaactaagaaaaatattaaataagaatttagaatcactagaagaaaaatcatctttt
gaaacaatagatagttatttaccatatttctctgaaactacggaaagtttttttgattat
tttaaggattatttttttgtagtaaatgatgttcaaagatgcaagggtaaattggaatca
atatatttagaatttgaagaaaactttactgctttctcgcaaaggggggatatattccca
agacaaggagaacttttaataagtaaagaagaagtgtttgaatcatttgaaggaaaaaat
attgttttctttgaatcattaacaaaggctaatgattggctaaaaccatttgtaacagtt
aatgtatcacaagtaaccttaaataattatcaaggacaattagatttattaattgatgat
atattaagtaaaaaaagtttaggatataaaacgttgatattatctggaacaagggcaaga
ggagaacgtttagttgctacgcttagagatagaggaatagaaagttcttatcgagacaca
attgatgatattcaatatggtgaggttgtaattacatttggaaatcagttaaaaggattt
gaatatcctgaatataaaatatgtttaatatctgatagagaggtatttggagaagcgaag
agaaaaattaaaaataagaaatccaagaaaaaaggggtttctaaaataaaaagttttgct
gaactaaagcctggtgattatgtagttcatgctaatcatggtatcggtgtatataaggga
attaagcaaattgatgttgcaggacacaaaagagattatttagatatcgtgtatgataag
ggagataagctatatgttcctgtagaacagcttgatttaattcaaaagtatattggaaat
gaaggaaagtctccaaaagttaataagcttggaagtgctgaatggcaaaaggcaaaagct
aaagttaggaaatcaattaatgaaatcgcagaggatttagttaagctttatgcaatgaga
acaacagtaaagggacataaattttctaaagatacagaatggcaaaaacaatttgaagat
gaattcccatttgaggaaactccagatcaattaacttcattagaggaaataaagttagat
atggaatgcgataagcctatggatagacttttgtgtggtgatgttggatatggaaaaaca
gaagttgcgttaagggcggcatttaaagcagttatggatggtaagcaagtcgcactttta
gttccaactactattttggcggaacaacattataagaatatgaaaaatagattttctgat
ttccctataaaaatagatatggttagtagatttagaacaacaaaacaacaaaatgaaact
cttaaaaaagtaaaagaaggaaatgtagatattttaataggaacacatagattagtgtct
aaggatattcaatttaaagatttaggacttcttatagtagatgaagagcaaagatttgga
gtgaaacaaaaggaaaagattaaaaatatcaaaaaaaatattgatgttttaaccttgagt
gcaacacctataccaagaactcttcatatgtcattaagcggtgttagagatatttcagtt
atagaaactccaccggaagaaagatatccagttcaaacttatgttgtagaacaaaatgat
cagcttataagagatgcaatacttagagaaataggtagaggtggtcaagtttattttgtt
tataacagagttgaggatattgaaagaatagccaagtatgtacaaggattagttccagaa
agcaaagttggaattgctcatggacaaatggctgaaaggcaactagaaaaagaaatgttt
gactttatggctggagaatacaatgtattggtatgtacaactataatagaaacaggaatg
gatattcaaaatgttaatacaataataatttatgattcagataaaatgggattatcacaa
ctttatcaattaagaggtagagtaggaagatcaaataggatagcatatgcatatctttta
tatacaaaagataaggttttgacagaagttgcagaaaaaaggcttaaagcactaaaagat
tttactgaattaggttctggtttcaagattgctatgagagatcttgaaataagaggtgca
ggtaacatgatgggttcatctcaacatggtcatatggcttcaataggatatgatttatat
tgtaggatgcttgaagatacggttaagttaattaaaggcgaaattcaaaaggagccagta
gaaacaactgtagatgtaaaagttgatgcgtttatatcagaaaactatatagatgacgaa
attcaaaaaatcgaagtgtataagaaaattgccgcaattgatggtatagaagattataat
gatataaaagaagaattagaagacagatattctaaaattccagaaccagtttataattta
atggatattgcatatataaagagccaagctaaatcgatttttatagaagaaataaaggaa
actcctaaagagataatatttagatttgctgagggagagagcgaatacaagaacatattt
aaatctttaattgaaaaatataaagatagtgtagtattaaaatttggattaaatccatat
tttgcatttaaattaaaaaatataaagatggaaaataaattagaattcttgaagaatgta
ttcaatgacataatattgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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