KEGG   Cynoglossus semilaevis (tongue sole): 103396226
Entry
103396226         CDS       T04866                                 
Symbol
col6a2
Name
(RefSeq) collagen alpha-2(VI) chain
  KO
K06238  collagen type VI alpha
Organism
csem  Cynoglossus semilaevis (tongue sole)
Pathway
csem04510  Focal adhesion
csem04512  ECM-receptor interaction
csem04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:csem00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    103396226 (col6a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    103396226 (col6a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    103396226 (col6a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:csem04147]
    103396226 (col6a2)
   00536 Glycosaminoglycan binding proteins [BR:csem00536]
    103396226 (col6a2)
Exosome [BR:csem04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   103396226 (col6a2)
Glycosaminoglycan binding proteins [BR:csem00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   103396226 (col6a2)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   103396226 (col6a2)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3
Other DBs
NCBI-GeneID: 103396226
NCBI-ProteinID: XP_016897929
Position
20:6007443..6026406
AA seq 1011 aa
MSVLQKIGLCLLLGALAHGQASECSKKNECPIDVYFTIDTSETIALQEPPPGSLVESIKK
FTEQFVQRLDDAEIRGSVNINWNIGGLHFSMRQQVFSAIGPKNDFITRLRGIRYLGKGTF
IDCALANMTQEMLRSPTSPKALRFAVVITDGHVTGNPCGGIKVAAERARDEGIKIFAVAA
SNNIEETGLREIANSPAMVFRRDFMAVDLSQGKAIIQTDTIDRIVNTMKHIAYVECYKVS
CLETPGPPGPKGHRGQKGAKGDNGEPGTKGERGRPGDPGIEGPIGQPGIKGEKGVLGDKG
EFGAQGKKGVGGIPGRDGTDGQKGKIGRIGAPGCKGDPGDKGPDGHPGDVGERGPAGTDG
EKGDFGRPGRPGPPGTEGEPGPKGERGSSGSPGDPGLKGNPGNPGRAGTKGELGRRGEYG
PKGSSGPPGAIGEKGEMGSEGLRGLSGESGNKGAKGDNGLPGPRGAPGGPGESGKVGSRG
DPGDAGPRGEPGQAGPKGDAGRPGFNYPGPRGLTVTPEKYCNQTRGSRGDCGHKGEPGGK
GTPGEPGEPGPHGEPGLRGTRGELGRDGDPGPEGDPGLTECDVMNYIRETCGCCDCEKRC
GALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSFSKDPESESGTRVGVVQYSHNGTF
QAIRLNDPKIDSLTAFKDAVKRLEWIAGGTWTPSALKYAYDHLIRDSRRAKANVTVVVIT
DGRFDPRDDDSLLTYLCSDPSVDVSAIGIGDMFDQIEENESLKSIACQRDGRVLGMRRFA
DLVAEEFIDKIETVLCPEPVIICPDLPCKSEPAVASCVQRPVDVVFMLDGSERMGLENHR
RAKEFIENVARRLTLANGPTDERNARLALVQYGSPTEQRVEFPLTHNLTVISDTLANVNY
MDSSSALGSAIIHAVNNVVILQRGERKARRNAEVAFVFITDGITSTEQLEEGVTAMRRAE
GVPTVIAMGTDTDEEVLRKVSLGDMSAIFRGDDYNILNKPSFFERFVRWIC
NT seq 3036 nt   +upstreamnt  +downstreamnt
atgtcggtgttacagaaaattgggctctgtcttctcctgggagccctggctcatggccaa
gcgtcagagtgcagtaagaaaaacgaatgtcccatcgacgtgtacttcaccattgacaca
tccgagaccatcgctcttcaggaaccccctcctggatccctcgtggagagcatcaagaaa
ttcacggaacagtttgtacagcgtttggacgacgctgaaatccgaggttccgtgaacatc
aactggaacattggtggacttcacttctctatgaggcagcaggtcttcagtgccatcgga
cccaaaaatgacttcattactcgtttaagaggaatcaggtacctgggtaagggcaccttc
attgactgtgccctggccaacatgacccaggaaatgttgcgttcccccacctcccccaag
gccctgcgattcgcagtggtcatcactgacggtcacgtgactggaaacccgtgtggtggc
atcaaggtggcagcagagagagctcgagatgagggaatcaagatatttgctgtggctgca
tctaataatatagaagagaccggtctgagggagattgctaattctcctgccatggtcttc
aggagggacttcatggctgtagatcttagccagggcaaagccatcatacagacggacacc
atcgaccgcatcgttaacacgatgaaacatatagcgtatgtggagtgctataaggtttcc
tgtcttgaaacacccgggcctcctggtccaaaaggccacagaggacaaaagggtgctaaa
ggagacaatggtgaaccaggaacaaaaggagaaagaggtcgtccaggggatccaggtatt
gagggtcccatcggtcagcccggtatcaaaggagaaaaaggtgtattaggtgataaggga
gaatttggagctcaagggaaaaagggagttggtggaattccaggacgcgacggaacagat
ggacaaaagggtaaaattgggcgaattggtgctcccggctgtaaaggagaccctggagac
aagggtcccgatggtcaccccggagatgttggtgaacgtggccctgccggaactgatggc
gagaagggagactttggacgtccggggcgacctggtccccctggaaccgaaggagagcct
ggaccaaagggggagaggggaagttctggatcacctggtgaccctggactaaaaggaaac
ccaggaaatcctggacgtgcaggaaccaaaggagagctgggaagaagaggggagtatgga
ccaaagggctcttctggaccacctggtgcaattggagagaagggtgagatggggtcagag
ggcctgagaggactttcaggtgaatcaggaaacaaaggagctaagggcgacaatggtctt
ccaggccccagaggagcaccaggaggacccggagaatctggaaaagttggttccagaggt
gaccctggtgatgctggaccaagaggtgaacctggacaagctggaccaaagggagatgca
ggaagaccgggctttaactatcctggaccaagaggattaacagtaactccggaaaaatac
tgtaatcaaacgcgtggcagtagaggagactgtggtcacaaaggagagcctggaggtaaa
ggaaccccaggagaacctggagagccaggacctcatggggaacctggcctcagaggtaca
agaggagagttgggccgtgacggagatcctggacctgagggagatcctggcctgactgaa
tgtgatgtcatgaactacatcagggagacttgcggttgctgcgactgcgagaaacgctgc
ggagccttggacattgtgttcgtgattgacagttccgagtccgtgggattgaccaatttc
accctggagaagaactttgtcattaataccatcaacagactgggctccttctccaaagat
ccggagtcagagtcaggtaccagagtaggggttgtccagtacagtcacaacggaaccttc
caggccatcagactcaatgatcctaagattgactcattgaccgctttcaaggatgcggtg
aagcgtttggagtggatcgccggaggaacgtggactccctcagccctgaaatatgcctac
gatcacctgatcagggacagccgcagagcaaaggccaatgtcaccgttgtcgtcatcacc
gacggacgctttgaccccagagacgatgactcgcttctcacctacctctgcagtgatccg
agtgtcgacgtgagtgccatcggtatcggagacatgttcgaccagatcgaggagaacgag
agtctgaagagcatcgcctgtcaaagggacggcagggtcctgggaatgaggcgctttgcc
gacctagtggctgaggaatttatcgacaagatcgagactgtgctctgccctgagcctgtc
attatttgccccgatctgccttgtaaatcagagccggccgtggccagctgtgtgcagagg
ccggtggacgtggtgttcatgttggatggttccgaaaggatgggactggagaaccaccgg
cgggccaaggaattcattgagaacgtggcccgtcgccttacgctggccaacggcccgacg
gatgagaggaacgcccgcctggctttggtgcagtacggcagtcccacggagcagagagtg
gagttcccgctcacgcacaatctcacggtgatctctgatacgctggcaaacgttaactac
atggactcttcgtccgccctgggcagcgccatcatccatgctgtcaacaatgtggtgatt
ttacagcggggagaacgcaaggcgcgccgcaacgcggaggtcgcctttgtgttcatcacc
gatggcatcacctcaactgagcagctggaggagggcgtgaccgccatgaggcgagcagaa
ggcgttccgacagtgattgccatgggaacagacacagacgaggaggtgctgcgaaaggtg
tcactaggagacatgtcagccatcttcagaggggacgactacaacatcctgaacaaaccc
tctttctttgagcgcttcgtccgctggatatgctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (45)   

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