KEGG   Clostridium saccharolyticum WM1: Closa_3948
Entry
Closa_3948        CDS       T01288                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
csh  Clostridium saccharolyticum WM1
Pathway
csh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Closa_3948
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csh03019]
    Closa_3948
   03009 Ribosome biogenesis [BR:csh03009]
    Closa_3948
Enzymes [BR:csh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Closa_3948
Messenger RNA biogenesis [BR:csh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Closa_3948
Ribosome biogenesis [BR:csh03009]
 Prokaryotic type
  rRNA helicases
   Closa_3948
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 CMS1 AAA_22
Other DBs
NCBI-ProteinID: ADL06460
UniProt: D9R1D7
Position
complement(4279366..4281084)
AA seq 572 aa
MGTRLAVRKDQAFMETVRFDELQLDERILRAVADMGFEEASPIQAQAIPVQAEGRDIIGQ
AQTGTGKTAAFGIPLLQKIDPKVKKLQAVALCPTRELAIQVADEIRRLAKYMHGVKVVPI
YGGQDIVKQIRSLKDGTQIIIGTPGRVMDHMRRKTVKFDHVHTVIMDEADEMLNMGFLED
METILSQLPEERQTVMFSATMPPAIMEIARKFQQDPVTVKVVKKELTVPKVTQYYYEVKP
KSKVEVMCRLLDMYAPKLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQIQRDRVMG
SFRNGKTEILVATDVAARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFV
VGKEVYKLRDIQRYCKTKIVPQAIPSLNDVTAIKVDKILETVADTIGDTDLSKTVNIIEK
KLLEEDYTSLDLAAALLKMMMGEENEDIIDTREPRSLDELDNFYGGGSRGRSSGRNGSGS
SRGGRYDSSRDDMARLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEV
PRENADAVLQAMKDVKIKGKNIHMEKANGKGR
NT seq 1719 nt   +upstreamnt  +downstreamnt
atgggaacccggttggccgtaagaaaggatcaagcatttatggaaacagttagatttgat
gaattacagttagatgaaagaattctgcgggcagttgcggatatgggatttgaagaagca
tctcccattcaggcccaggccattccggttcaggcagaaggccgggatattatcggtcag
gctcagacgggaacagggaaaacagccgcctttggcatccctctgctgcagaaaattgac
cctaaggtgaaaaagcttcaggcggtggctctctgtcctaccagagaacttgccatccag
gtggcagatgaaatccgcaggcttgcaaaatatatgcacggtgtaaaggtcgttcccata
tacgggggacaggatattgtaaaacaaatccgatcactgaaagatggtacccagatcatt
atcgggacaccgggacgtgttatggaccatatgcgcaggaagaccgtgaaattcgatcac
gttcataccgtgatcatggatgaagccgatgagatgttaaatatgggattccttgaggac
atggaaaccattttaagccagcttccagaggaacggcagaccgttatgttctccgcaacc
atgccgccagccatcatggagatcgccagaaagttccagcaggatccggtgactgttaaa
gtggtaaagaaggagctgacagttcccaaggtgactcagtattattatgaggtgaaaccg
aagagtaaggttgaggttatgtgccgccttctggatatgtacgctccaaagctttctgtt
gctttctgcaacaccaaaaagcaggttgatgagctggtacaggcccttcagggaagggga
tattttgcggaaggacttcatggagatttaaagcagattcagcgtgaccgggtcatgggc
agcttccgtaacggtaagacggagatccttgtagcgaccgacgtagcggcccgaggaatt
gacgtagacgacgtagaggctgtattcaattacgaccttccccaggatgacgaatattat
gttcaccggatcggccgtaccggccgtgcaggccgtgagggcattgcattcagttttgtt
gtggggaaagaggtttacaagcttcgtgacattcagcgttactgcaagaccaagatcgtt
cctcaggcgatcccatccttaaatgatgtaacagccataaaggtggataagatcttagag
accgtggcagataccatcggggatacagatttaagcaagacggtaaacattattgaaaag
aagcttctggaagaggattatacctctcttgaccttgcggcagcattgcttaagatgatg
atgggtgaggaaaatgaggatattattgatacaagagagcctcgttcccttgatgaactg
gataacttctacggcggaggaagccggggacgcagcagcggaagaaacggaagcggcagc
agccgcggaggaagatatgattcttccagagacgatatggcccgtctgtttatcaatatc
gggaaaaaccagaatgtgaagccgggagatatccttggtgccattgcaggagagtccggt
atgcctggaaagatggtgggaagtattgatatgtatgacaagtatacctttgtagaggtg
cccagggaaaacgctgacgccgtattacaggccatgaaggatgtaaagatcaaaggaaaa
aatatccatatggaaaaagccaacggaaaaggcagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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