KEGG   Cronobacter malonaticus CMCC45402: P262_01597
Entry
P262_01597        CDS       T02955                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
csi  Cronobacter malonaticus CMCC45402
Pathway
csi03030  DNA replication
csi03410  Base excision repair
csi03420  Nucleotide excision repair
csi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    P262_01597
   03410 Base excision repair
    P262_01597
   03420 Nucleotide excision repair
    P262_01597
   03430 Mismatch repair
    P262_01597
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csi03032]
    P262_01597
   03400 DNA repair and recombination proteins [BR:csi03400]
    P262_01597
Enzymes [BR:csi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     P262_01597
DNA replication proteins [BR:csi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     P262_01597
DNA repair and recombination proteins [BR:csi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     P262_01597
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     P262_01597
   MMR (mismatch excision repair)
    DNA ligase
     P262_01597
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      P262_01597
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH 5_3_exonuc DZR_2
Other DBs
NCBI-ProteinID: AHB69498
UniProt: V5TWH2
Position
1194505..1196523
AA seq 672 aa
MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQ
RVGAAPLTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKSTDALVYCCELKLDGLA
VSLLYENGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGELPRSHM
ERLQQFKAWGLPVSERIRLVKTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLELQEQL
GFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVLSERPQETRPVVFPAHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNLVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALIN
ASIDDLQKVPDVGIVVATHVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFA
GKTVVLTGTLSQMSRDDAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEV
IDEAEMLRLLGE
NT seq 2019 nt   +upstreamnt  +downstreamnt
atggaatcaatcgaagaaaaactgactcaactgcgaaccacgcttcgccatcatgaattt
ctctaccacgttatggacgcgccggaagtgccggatgccgaatacgatcgcctgatgcgc
gagctgcgcgcgctggaagaggcgcatccggaactggtgacgcccgattcgcctacccaa
cgcgttggcgccgcgccgctgaccgagttcagccaggtgcggcatgaagtgccgatgctc
tcgctggataacgtgtttgacgaggcgagtttcctggcgttcaacaaacgcgtacaggat
cgcctgaaaagcaccgatgcgctggtgtactgctgcgagctgaaactcgatggcctggcg
gtcagcctgctgtatgaaaatgggctgctggtccgcgccgccactcgcggcgacggcacc
accggcgaagatatcacgctcaacgtgcgcaccattcgcgccattccgctgaagcttcgc
ggtgacaacattccggcgcgcctcgaagtgcgcggtgaagtgtttctgccgcaggcgggc
tttgaaaaaattaacgaagaagcccggcgcacgggtgggaaagttttcgccaacccgcgc
aacgcggcggcgggatcgctgcgtcagctcgatccgcgcgtcacggccaaacgtccgctg
acatttttctgttatggcgttgggttgctggaaggcggcgagctgccgcgcagccatatg
gaacgtctgcaacagtttaaagcctggggactgccggtgagcgagcgtattcgtctcgtg
aaaacgccggaagaggtactggcgttttaccatcaggtcgaggccgacaggccgacgctc
gggtttgatattgatggcgtggtgattaaagtcgattcgcttgagcttcaggaacagctt
ggcttcgtggcgcgcgcgccacgctgggccgtggcgtttaagttcccggcccaggagcag
atgacgaccgttcgcgatgtggagttccaggtcgggcgcaccggcgctatcacgcctgtc
gcgcgccttgagccggtgcaggtggcaggtgtgctggtgagcaacgcgacgctgcataat
gccgatgaaatagcccgcctcgggctgcgcatcggcgataaagtggtgattcgccgcgcg
ggggatgttattccgcaggtggtcaacgtggtgctctctgagcgcccgcaagagacgcgg
ccggttgtattcccggcgcactgcccggtctgcggctcggacgttgagcgcgttgaaggc
gaggccgtaacgcgctgcaccggcgggcttatttgcggcgcgcagcgcaaagaggcgctc
aagcattttgtttcccgccgtgcgatggatgtggacggcatgggcgataaaatcatcgat
cagctggttgagaaagaatatgtgcatacgcctgccgatctgttccgtctgaccgcaggt
aagctgaccggtctggatcgtatggggccgaaatcggcgcagaatctggtcaatgcgctg
gagaaagccaaagaaaccactttcgcgcgtttcctgtatgcccttggcatcagggaagtg
ggggaggcaaccgccgccgggcttgcggcgcatttcggcacgctggaggcgctgattaac
gcctcgatcgacgacctgcagaaagtgccggatgtcggtatcgtggtcgcgacgcatgtg
ttcaatttctttgaagaagagagcaaccgcgccgtcattcgcgatctcaccgaagaagta
ggcattcactggcctgcgccgcaggtggtaaaagccgaagagatagacagcccgttcgcc
gggaaaacggtggtgctgaccggtacgttaagccagatgtcgcgcgatgacgctaaagcc
cggcttgccgcgctgggcgcgaaggtcagcggcagcgtgtcgaagaaaaccgatctgctt
attgccggtgaagcggcaggctccaagcttgcgaaagcgcaggagctgggcattgaggtc
atcgacgaggcagaaatgctgcgtttgctaggtgagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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