KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_53187
Entry
COCSUDRAFT_53187  CDS       T02914                                 
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
csl  Coccomyxa subellipsoidea
Pathway
csl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCSUDRAFT_53187
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csl03041]
    COCSUDRAFT_53187
   03009 Ribosome biogenesis [BR:csl03009]
    COCSUDRAFT_53187
Enzymes [BR:csl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     COCSUDRAFT_53187
Spliceosome [BR:csl03041]
 Complex A
  U2 snRNP components
   U2 related factors
    COCSUDRAFT_53187
 Complex B
    COCSUDRAFT_53187
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    COCSUDRAFT_53187
Ribosome biogenesis [BR:csl03009]
 Eukaryotic type
  90S particles
   Helicases
    COCSUDRAFT_53187
SSDB
Motif
Pfam: OB_NTP_bind HA2_C DEAD Helicase_C HA2_N AAA_22 ResIII AAA_19 nSTAND3 Flavi_DEAD SRP54 ABC_tran AAA_7 ATPase AAA_29 PhoH AAA_30 FtsK_SpoIIIE NACHT Helicase_RecD TrwB_AAD_bind TsaE T2SSE AAA_23
Other DBs
NCBI-GeneID: 17042004
NCBI-ProteinID: XP_005648550
JGI: 53187
UniProt: I0Z037
AA seq 701 aa
MGDRKRKLDVFTGENGAQQNGNGLINPFTGRPYSQQYLNILQKRKGLPVWQAREDFVDMI
HKNQTTILVGETGSGKTTQIAQFIMEAGYTQQTGKLIACTQPRRVAAMSVARRVADEVDV
NLGEEVGYSIRFEECSGPRTKIKFMTDGMLLREAMSDPLLERYSVVILDEAHERTLATDV
LFGLIKEVLKQRKDLKLVVMSATLEAEKFQGYFLDAPLMKVPGRLHPVEIFYTQEPERDY
LEAAIRTVVQIHVCEPPGDILVFLTGEEEIEDACKKIAREITQMGDQVGPIKVFPLYSTL
PPKQQQMIFDPAPPPARPGGPQGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRI
RVESLLVSPISRASAHQRAGRAGRTQPGKCFRLYTEASFKSDLQEQTYPEILRSNLGSVV
LQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGGLDDNGNLTEVGTIMAEYPLDPQL
AKMVVASPEFSCSNEILSIAAMLSVPNVFLRPREAAKAADEAKARFAHIDGDHLTLLNVY
HAYKQNGEAHDWCYDHFLNSRALKAADSVRGQLVRIATRLGTPLVSADFKSRDYYPNIRK
AITAGYFMQVAHLERTGHYLTVKDNQMVHLHPSTCLDHKPEWALYQEFVLTSRNYIRTVT
DIKGEWLVDIAPHYYDLQNYPPGEARRSLERLFAKREKERR
NT seq 2106 nt   +upstreamnt  +downstreamnt
atgggtgatcggaagaggaagctggatgtcttcacgggggaaaatggcgctcagcagaat
ggaaacggcctgatcaatcctttcacggggcgtccctacagtcaacaatacttgaacatt
ttgcagaaacggaaggggttgcctgtatggcaagcacgggaagacttcgtggacatgatc
cacaagaaccagacaaccattctggttggagagacgggctctggaaagaccacgcagatt
gcacagtttatcatggaggctggctacacacaacagactggcaagctgatagcctgcaca
cagccgcgcagggtggcggccatgtctgtggcgcggcgtgtggctgatgaagtggatgtg
aatctgggtgaggaggttgggtactccatccgttttgaggagtgctcagggccaaggacg
aagatcaagttcatgacagatggtatgctgctgcgagaggccatgagcgatcccttgctg
gagcgctacagtgtcgtcattcttgatgaggcccacgagcggacgcttgccacagatgtg
ctctttgggctgatcaaggaggtgctgaagcagcgcaaggatctgaagcttgtggtcatg
agtgcaacgctggaagcagagaagttccagggctacttcctggatgcacctctgatgaag
gtccccgggcggctgcaccctgtggagatcttctacacacaggaaccagagagggactat
cttgaagcggctatcaggactgtggtgcaaatacatgtgtgcgagccgcctggcgacatc
ctggtgttcctgacgggtgaggaggagatcgaggatgcctgcaagaagattgccagggag
atcacccagatgggagaccaggtggggcccatcaaggtgttcccgctgtactcgacgctg
ccgcccaagcagcagcagatgatctttgatccggcgccaccgccagcgcggccggggggc
ccgcagggacgcaagattgtggtgtcgaccaatattgcggagacgtcgctgaccatcgac
ggcatcgtgtatgtaatcgaccccggctttgccaagcagaaggtgtacaacccgcgcatc
cgcgtcgagtccctgctcgtctcgcccatctcccgggcgagcgcacatcagcgtgcgggc
agagccgggcgaacgcagccgggcaagtgcttccggctgtacacagaggcctccttcaag
tccgacctgcaggagcagacctacccggagatcctgcgctccaacctgggttctgtggtg
ctgcagctcaagaagctgggcatcgatgacctggtgcactttgatttcatggaccccccg
gccccggagacgctgatgcgagcgttggagctcctcaactacctgggcggcctggacgac
aatggcaatctgacagaggtcggcacgatcatggcggagtacccactggacccccagctg
gcgaagatggtggtcgcctccccagagttcagctgctccaacgagatcctgtccatcgcg
gccatgctgtcggtgcccaatgtgttcctgcggccgcgtgaggcggccaaggcggccgac
gaagccaaagcgcgctttgcccacatcgacggggatcacctgacgctgctgaacgtatac
cacgcatacaagcagaatggagaggcgcacgactggtgctacgaccacttccttaactcg
cgcgccctgaaggcggctgacagtgtgcgcggtcagctggtgcggatagcaaccaggctg
ggcacgccgctggtgagcgcagacttcaagtcacgcgattactaccccaacatccgcaag
gccatcacggccggctacttcatgcaggtggcgcacctcgagaggacggggcactacctg
acggtgaaggacaatcagatggtgcacctgcacccctccacctgcctggaccacaagccc
gagtgggcgctgtaccaggagtttgtgctgacctcacgcaactacatccgcacagtgaca
gacatcaagggcgagtggctggtggacatcgctccccactactacgacctgcagaactac
ccccctggcgaggcccggcggtctctggagcggctgtttgccaagcgggagaaggagcgc
agatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (100)   
   KEGG ORTHOLOGY (1)   
   RefGene (95)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (24)   
   Pfam (24)   
All databases (133)   

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