KEGG   Cucumis sativus (cucumber): 101203955
Entry
101203955         CDS       T02486                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101203955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csv03041]
    101203955
   03009 Ribosome biogenesis [BR:csv03009]
    101203955
Enzymes [BR:csv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     101203955
Spliceosome [BR:csv03041]
 Complex A
  U1 snRNP components
   U1 related factors
    101203955
 Complex B
    101203955
Ribosome biogenesis [BR:csv03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    101203955
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 101203955
NCBI-ProteinID: XP_004138092
Position
1:646107..650693
AA seq 622 aa
MNPYDHRYADPNSYRDRRSDLVGFQPAAPPPIAGRESLYKGYQPPPAPYYGRERGGGGAL
PNAGGVNGLPRFQPPAGSFNIGRGGGGGFGSSGGGRRTFDAERGGRRIGGSIGFGGGRGG
GTGFDGRGGGRGGGRGGGGSSRGDLDNIVLPSQNFGNLVPFEKNFYTECPSVRAMTESEV
KIYRERRDIRVEGYDVPRPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMALKGRD
LVGIAETGSGKTLAYLLPAVIHISAQPRLSRGEGPIVLVLAPTRELAVQIQQEATKFGLH
ANIRSTCVYGGAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADRM
LDMGFEPQIRTIVSQIRPDRQTLYWSATWPREVEKLARQFLRNAYKVIIGSPDLKANQSI
NQVVEVLPEAEKYRRLIKLLGEVMDGSRILIFVETKKGCDKVTRQLRMDGWPALSIHGDK
KQAERDLVLSEFKSGRNPIMTATDVAARGLDVKDIKCVINFDFPSSLEDYVHRIGRTGRA
GAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGAKFRSQGHRGG
FGNRTMVSGSNAIPLGLTTRPR
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgaatccttatgaccatagatacgccgatcctaattcctaccgcgaccgtcgaagtgac
ctagtgggttttcagcctgctgcgccaccgccaatagcagggcgtgaatccttgtataaa
ggctaccaacctcctccagctccatactatggtcgtgaaagaggtggtggaggtgcttta
cctaatgctggaggcgtcaatggcctccctcgatttcagcctcctgcaggatcgtttaat
attggccggggtggtggtggtggtttcggtagcagcggtggtggcaggaggacgtttgat
gcggagaggggtgggagaagaattggtgggagtattggttttggaggtggacgtggtgga
gggacgggatttgatggccgtggtggcggaagagggggtggacgaggtggtggtggttct
tcaagaggggatttggataacattgtccttccgagtcagaattttggcaatttggtgcct
tttgaaaagaatttctacactgagtgtccttctgtgcgtgcaatgacggagtctgaagtt
aagatttatagagagagacgtgatattagggtggaaggatacgatgtcccgagaccgatt
aggagttttcaggaggcgaattttcctgcttactgccttgatgtaattgcgaaattggga
tttgttgagccaactccaattcaggctcaaggatggccgatggccttgaaaggaagagat
ttggttggcattgctgaaactggctctgggaagactcttgcctatctactgccagctgta
atacacattagtgcccagcctcgtttatcgcgtggtgaaggtcccattgtgttggtgtta
gcacccactagagaattagctgttcaaattcagcaagaggctactaaattcggactgcat
gctaatattagaagtacttgcgtttatggtggggctccaaaagggcctcaaattcgtgat
ctcaaaaatggtgttgagattgttattgctacacctggtcggctcatagatatgctggaa
gctggccacacaaacttgcggcgagtgacttaccttgttttagatgaagcagatagaatg
ctggacatgggatttgagcctcaaataaggacaatcgttagccaaatccgaccggatagg
cagacattatattggagtgccacatggccaagggaggttgagaaattggctagacaattt
ttgcgtaatgcatataaggtcattattggttccccagatcttaaagctaaccagtctata
aaccaagttgttgaagttttgccagaggctgagaaatatagaaggttaataaaattgctc
ggagaagtaatggatggtagtcgtattctgatttttgtggaaacaaaaaagggctgtgat
aaagtaacgaggcaattgagaatggatggatggccagctctatccattcacggtgacaaa
aagcaggctgaaagggacttggttttgtcagaatttaagagtgggagaaacccaataatg
acagccacggatgtggctgcaagagggcttgatgtgaaagatataaaatgtgtgatcaac
tttgatttcccatcaagcctcgaggactacgtccacaggataggccgaacgggtcgtgct
ggtgcaaagggaactgcattcacattctttactcatgagaatgcaaaacacgctagagat
cttataaagatactgcgagaagcagggcagattgtcacccctgcgttgtctgctttagcc
tcatctagtggctttggaggttctggtgctaaatttcgctcccaaggacacagaggtggg
tttggtaatcgaacaatggtttcgggatcaaatgcgatccctcttggtttgacgaccaga
ccacgctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (52)   

Download RDF
DBGET integrated database retrieval system