KEGG   Thermochaetoides thermophila: CTHT_0029860
Entry
CTHT_0029860      CDS       T03100                                 
Name
(RefSeq) putative nonsense-mediated protein
  KO
K14327  regulator of nonsense transcripts 2
Organism
cthr  Thermochaetoides thermophila
Pathway
cthr03013  Nucleocytoplasmic transport
cthr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cthr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CTHT_0029860
   03015 mRNA surveillance pathway
    CTHT_0029860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cthr03019]
    CTHT_0029860
Messenger RNA biogenesis [BR:cthr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     CTHT_0029860
   mRNA cycle factors
    P-body specific factors
     CTHT_0029860
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 18257024
NCBI-ProteinID: XP_006693441
UniProt: G0S8H1
Position
Unknown
AA seq 1158 aa
MDRARRHELRELNVRAWNGETGLFPVAASLDSTMKKNTAFIKRLRTAISPATLNTFLQEI
KTVSLSKYLSEIISACHEGLCKLKSPGEIEAAVEIVSALHQRFGPHEFTCYLAWHLGKSL
ATPDKSVLKTLTPEAREKEEKDRLSRQRVLLRVVTELWLVGVLRTLDDAKRPDDVIANGA
TGKQAEVKSKASAKGNPAEPFPLEVLKDLLGHDREHVNLPLLVVFVKAFSWDVLGVRGAG
SEGRKTVEEDGATKAAAPPAEGNNASSAEDQQEGQPAPSSQDPPLTPPELQERFKNVLRR
YFEDVKQHLIRDQKALASQSRKNAEAYVKSGEVFEDRQANFEKQVKAQERLIANAQVIAD
AIGAEMPDLKEHEDVSATANGSIGLVKTGEYLRGQGDGPGIWEDEEERRFYENLVDLRGK
VPGILLEEVKKKKQDSDEQVGKKIDLETAAEAKQVDASAEDQSVAIANKTIGAQVDALLA
RLPDLTTKDAVDQMAIDFCYLNSKASRNRLIKALTDVPKGRTDLLPCWARLAATLGQYMS
DVPKGLVEYLDNEFRSLQRRKDKEFLGQVRLINIRYLAELTKFGVVPEHVVFHCLKVSLD
DFSRVNIEIICTMLENCGRYLLRNPETSPRMASFLETLQRKKSVQHIGQAEKMLIENAVY
YVDPPQRPAIQQKERTPMELFIRKLIYADLNKRSYDKVLRQIRRLHWEEKEVVAVLHKVF
SKPSKVKYSNIHLLAILLSALYRYHPAFVIGVVDTVIESIALGLEQNDFRYNQRRVAEVK
YLGELYNYRMLEHPVIFDTMYKIMTFGYGGPPIPGQINPFDPPDDFFRIRLIATLLETCG
MYFNKGTAGKKLDYFLSFFQYYIYTKNPLPMDIEFLVQDIFALTRPQWKLASNLEEATKA
FQLAIKSSGLDKAVEQDDQGSGVSSDDDANVEDGEKEEQDGDENDGEDEDEGEDDENAEE
EPSYRNDNDSDSERGNHDDDEDEEEEEEEAIVVTREEEEIDPEWEAEFDREYAKIMAESY
ETRKFERKQFDIPLPVRPKNQQRSDESGETGSGGQTTTPGKMAFSLLTKKGNRQQTKTVE
LPSDSSFAVAMINQRQAAKEEQQRIKNLVLNYDLREEEEDDDNDKPISHHHHFNRSENRN
SKDRGQRVRKLQLSDVDW
NT seq 3477 nt   +upstreamnt  +downstreamnt
atggaccgcgcacgtcgccatgagctgcgcgagctgaatgtgcgggcgtggaatggcgag
acgggcctcttccccgtggccgcgtcgctcgactcgaccatgaagaagaacacggccttc
atcaagcgcctgcgcaccgccatctcccccgccactctcaacacgttcctgcaggaaatc
aagaccgtcagcctgtccaagtacctgtccgaaatcatctcggcctgccacgagggcctc
tgtaagctcaagtcgcccggcgagatcgaggcggctgtcgagatcgtcagcgccctgcac
cagcgctttggtccccacgaattcacatgctacttagcctggcacctgggcaagtcgctg
gccacgccggacaagagcgtgctcaagaccctgactccagaggcccgtgagaaggaggag
aaggaccgcctatcgcgccagcgcgtgctgctgcgtgtcgtcaccgagctctggctcgtc
ggcgtgctgcgcaccctcgacgacgccaagcggcccgacgacgtcattgccaacggcgcc
actggcaagcaggccgaagtcaagtccaaggcctcggccaagggcaaccccgccgagccc
ttcccgctcgaagtgctcaaggacctgctcggccacgatcgcgagcacgtcaacctgccc
ctgctggttgtctttgtgaaggccttcagctgggatgtcctgggcgtgcgcggcgccggc
tccgagggccgcaagacggtcgaggaagacggcgcgaccaaagctgcggctcccccggcc
gagggcaacaatgccagctccgccgaggaccagcaagagggccagccagctccgagctcc
caagacccgcccctgacgccgccagagctccaagagcgcttcaagaatgtgctccgccga
tactttgaggatgtcaagcagcatctcatccgcgaccagaaggcccttgccagccagtcg
cgcaagaatgccgaggcctacgtcaagtcgggcgaggtgttcgaggaccgccaggccaac
tttgagaagcaggtcaaggcccaggagcgtctaatcgccaacgcccaggtcattgccgac
gccatcggcgccgagatgccggacctgaaggagcacgaggatgtatctgccaccgcgaac
ggctccatcggcctggttaagaccggcgagtacctgcgtggtcagggcgacggacccggg
atctgggaggacgaggaggaacgtcgcttctacgaaaacctggtcgatctccgcggcaag
gtgcccggcattctgctcgaggaggtcaagaagaagaagcaggattctgacgagcaggtc
ggcaagaagatcgacctagagaccgccgctgaggccaagcaggtcgatgcttccgccgag
gaccagtctgtggccattgccaacaagaccatcggcgcgcaggtcgacgctctgctcgct
cgcctgcccgacctgacgaccaaggacgccgtcgaccagatggccatcgatttctgctac
ctcaactccaaggcttcgcgcaaccgcctgatcaaagccctgaccgacgtgcctaagggc
cgcaccgatctcctcccgtgttgggcccgcctggccgccaccctcggccagtacatgtcc
gacgtccccaaggggctggtcgagtacctggataacgagtttcgcagcctgcagcgccgc
aaggacaaggagttcctgggccaggtgcgcctcatcaacatccggtacctggccgagctg
accaagtttggcgtggtccccgagcacgtggtgtttcactgtctcaaggtcagcctggac
gacttttccagggtgaacattgagattatttgcactatgctcgagaactgtggccggtac
ctgctgcgcaaccctgagacgtcgccacgcatggcgagtttcctggagacgctgcagagg
aagaagtccgtgcagcatatcggtcaggcggagaagatgcttattgagaatgccgtctac
tatgttgatccgccgcagcgcccggccattcagcagaaggagcgcacgccaatggagttg
ttcatcaggaagctaatctatgctgatctgaataagcgcagctacgataaggtgctgagg
cagattcggaggcttcactgggaggagaaggaggtcgtcgccgtccttcacaaggtcttt
tccaagcccagcaaagtcaagtacagcaacatccacctcctggccatcctcctcagcgcc
ctctaccgctaccacccggctttcgtcatcggtgtcgtcgacaccgtcatcgaatccatc
gccctcggcctcgagcagaacgacttccgctacaaccagcgccgcgtcgccgaagtcaag
tacctcggcgagctctataactaccgcatgctggaacaccccgtcatcttcgacaccatg
tacaagatcatgacctttggctacggcggcccgcccatccccggtcagatcaacccgttt
gatccgcccgatgactttttcaggatcaggctgatcgcaaccctgttggagacgtgcggc
atgtatttcaacaagggtaccgcgggcaagaagctagattatttcctttccttcttccag
tattatatctacaccaagaaccctctgccgatggatatcgagttcctggtgcaggacatc
tttgcgctgaccaggccccagtggaagttggcttctaacctggaggaggcgaccaaggcg
ttccagctggccatcaagtcatctggtctggacaaggccgttgagcaggatgatcagggc
agtggggtcagcagtgatgatgatgcgaatgtggaggatggggaaaaggaggaacaggat
ggggatgagaatgacggggaggatgaagacgagggagaggatgacgaaaacgccgaggaa
gaaccctcctatcgcaacgacaacgactccgactccgagcgaggcaaccatgacgacgat
gaagacgaagaagaagaggaagaagaagccatcgtggtcacccgcgaggaggaagaaatt
gaccccgaatgggaagccgaattcgaccgggaatatgccaagatcatggcggaaagctac
gagacgcgaaagtttgagcggaaacaattcgatatccccttgcctgtgcgtcccaagaac
cagcagcgctcggatgaatcgggtgaaacaggcagcggggggcagaccacgacgccgggc
aagatggctttttcgctgctcaccaagaagggcaatcgccagcagacgaagacggtggag
ctgccgtcggattcgagcttcgcggttgctatgatcaatcagaggcaggcggccaaggag
gagcagcaaaggattaagaacttggtgttgaattatgatttgagggaggaagaggaggat
gacgacaacgacaagcctatctctcatcatcaccacttcaaccggtcggagaatcgcaac
agcaaggaccgtgggcaaagggtgaggaagttacagttgagtgatgttgattggtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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