KEGG   Chlamydia trachomatis L2b/Ams1: L2BAMS1_00411
Entry
L2BAMS1_00411     CDS       T02558                                 
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
ctrm  Chlamydia trachomatis L2b/Ams1
Pathway
ctrm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ctrm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    L2BAMS1_00411
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctrm03019]
    L2BAMS1_00411
   03016 Transfer RNA biogenesis [BR:ctrm03016]
    L2BAMS1_00411
Enzymes [BR:ctrm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     L2BAMS1_00411
Messenger RNA biogenesis [BR:ctrm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     L2BAMS1_00411
Transfer RNA biogenesis [BR:ctrm03016]
 Prokaryotic type
  tRNA degradation factors
   L2BAMS1_00411
SSDB
Motif
Pfam: RNB OB_RNB CSD2 DUF3006
Other DBs
NCBI-ProteinID: CCP70442
Position
450827..452911
AA seq 694 aa
MGKAKNKKKFLKNRKQVLVPGTLFVHSRKGFGFVSPDQPELYPFDIFISASDLKGALDGD
HVLVALPFSLRGGEKRKGVIHKVLSRGKTVLVGTIVSLINPTLAMVCVNTIGPEHPLKAE
LLPKRTYKLGDRLLLKTPVWKENYPSKEPPPLAMLEFIGNISNAKTDFPVIKAEFSITEE
FPDAVVQEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILG
VHIADVSHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVF
MTFSKEGFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIR
EQRGCTRLVLPSFTMSLDNLQEPVALIENKQTAAHKLIEEFMLKANEVIAYHISHQGITM
PFRTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVR
SMKTASYSTENKGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHSLSVEEEHLEQIVRACS
SQERIAAKAEGAFVNIKKARFLKKFIEEQPATLYKAFIITASPEGISFVLPEFCHEGFIP
AAKLPQAYVLQTKIGLEELPEHLRPGAVISVQLASVTLLTQSIEWTLVEATTKAKAKRTS
KKKKTESVTTKEKKKSSAKKKKGATKTKKGSGKN
NT seq 2085 nt   +upstreamnt  +downstreamnt
gtgggaaaagctaaaaacaaaaagaaatttctaaaaaatagaaagcaggttctggttcct
ggtaccttattcgtccattctagaaagggctttggatttgtatccccagatcaaccggag
ttatatccttttgatattttcatctcagctagcgacttaaaaggtgctttggatggagat
catgttctcgtggctctccccttttctcttcgtggaggagaaaaaagaaaaggggtcatt
cataaagttctttctcgagggaaaacagtcttagtagggactattgtctctcttatcaat
ccaactctagctatggtttgtgtgaataccataggccctgaacatcctttaaaagccgag
ctcttacctaaaaggacttacaaactgggagatcggttgttactaaaaactcctgtgtgg
aaggagaattatcccagtaaagaaccacctcccttggctatgctggaatttataggcaat
atctctaatgctaagacagattttcctgttattaaagccgaattctctattacagaagag
ttccccgatgcagtggtacaggaagctagtcagttcttacaaaagcacgtaacacaagcg
ttacactcgaggaaagatctccgagatttgttatgtttcaccatagactcttcctctgct
aaggactttgacgacgcagtctcactaacttatgatcatgagggaaactatattctaggt
gttcatattgcggacgtctcccactacgtgactccaaattccgctttggatagagaagct
gctaaacggtgcaactcgatctacttccctggaaaagtcatccctatgctgccttcagcc
ctttctgacaatctgtgcagcttaaaacctaatgtggatcgcttagctgtatccgtattt
atgactttctctaaagagggattcctttctgactaccgaattttgcgtagcgtcattcgt
agtaaataccgtatgacatacgatgaggtagatgaaattatcgagaaaaaacagactcac
cctatttctaaaaccattttaaagatggctgaattgagccgtattttttctgacatccga
gaacaacgtggatgcacgcgtctcgttcttccttcgttcacgatgtctcttgataattta
caagagcctgtagcccttatcgaaaacaaacaaacagctgctcataaactcattgaagag
tttatgctgaaagcgaatgaagtgatagcctatcacatttcccatcagggaataaccatg
ccattccgcacacatgaacctcctaatgaagaaagtctccttgtgtttcaagagacagca
aaggctatgggcttcaccattacacaaaccccggcgcaagaaccagattaccaatattta
ttgcaggaaacgactgcaggccatcctttggagccaatccttcattctcagtttgtacgc
agtatgaagacggcttcctattctacggaaaacaaaggccattacggtctgtgcttagac
tactacacacactttactagcccgatccgccgatacgtggatttgatcgttcaccgactg
cttttccattctctctctgtagaagaagagcatcttgaacaaattgttcgagcctgctca
tcccaagaacgcattgcagcgaaagctgagggagcttttgtaaatattaagaaggctcgc
ttcttgaaaaaattcatagaagagcagcctgcaactctttataaagctttcattattacg
gcatccccggaagggatctcttttgtcctcccagaattttgtcatgaaggtttcattcct
gcggctaaactacctcaagcgtacgtccttcaaacaaaaataggattagaagaacttcct
gaacatttgcgtcctggagctgttatttctgtgcaactggcttctgtcaccttgctcaca
cagtctatcgagtggacgttggttgaagccacaactaaagctaaagcaaagcgtacctct
aaaaagaaaaaaacagaatctgtcacgactaaagaaaagaaaaagagttctgctaaaaag
aaaaaaggagctaccaaaacgaagaagggcagtgggaaaaattag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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