KEGG   Acetivibrio thermocellus DSM 1313: Clo1313_1249
Entry
Clo1313_1249      CDS       T01933                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
ctx  Acetivibrio thermocellus DSM 1313
Pathway
ctx03420  Nucleotide excision repair
ctx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ctx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Clo1313_1249
   03430 Mismatch repair
    Clo1313_1249
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ctx03400]
    Clo1313_1249
Enzymes [BR:ctx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Clo1313_1249
DNA repair and recombination proteins [BR:ctx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Clo1313_1249
   MMR (mismatch excision repair)
    Other MMR factors
     Clo1313_1249
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_11 AAA_30 Rubrerythrin PcrA_UvrD_tudor
Other DBs
NCBI-ProteinID: ADU74312
Position
1479986..1482106
AA seq 706 aa
MNQEEFFRLLSDKYNINLNPQQKEAVLRIHGPSLLLSVPGGGKTTVIVSRCANMVLNHKI
PPEKILTLTFSKAAAQDMKTRFCDIFGKELARNMVFSTIHSFCYSVVRCYVESKNKPMPQ
ILEDGEGQISKNQMLKRIYHEVNNEYISDDRLEDLSNSVSFVKNMLYTEDDIKKLDIGIK
NFIDIYNAYEKRKKSEGYIDYDDMLTGTYKLLKRNTGITNMLRERYHYINVDESQDTSLV
QHEIIKLVAHPKNNIFMVGDEDQSIYGFRAAFPQALLDFKKTYPDAKILLMERNYRSTKS
IVIPANIFIKQNKGRYEKNMYTENEEGEAVVFKHVKNRNEQYAYLTSVLKSESNLSECAV
LYRNNISAIPLVDYLEYNNIPFYIRDTNLHFFKHWVVNDVLSFIRLALDPCDIEAFGQIY
YKIGAFISREMFEYVAENMGKGKGVMETLLNFPNLPEDTCNAVKYLAGQIETIDYLKPLK
AIEFIEKECEYEKYIRRASKEMGYSIDSLNYIIDGLKSIASRVDSFDEFFGRLSILKSAI
ENSGKNRYKNAVVLTTIHSSKGLEFDKVYMIDLVDGQFPSSKSISDCKEGNDALMEEEVR
LFYVGVTRARKYLELITFSKVNNKPVSVSRFVHRFNLVQKQTESRALPNEICEGAILEHV
KFGQGLVTRIDESKDLIVIEFEGVGTKMLSLKTCIDGKKIQPVKIS
NT seq 2121 nt   +upstreamnt  +downstreamnt
atgaatcaggaagagtttttcaggcttttgtcagacaaatacaatattaatttgaatccc
cagcaaaaggaggctgttttgcgaattcacgggccttcacttttgctttccgtgccggga
gggggaaaaaccaccgtaattgtgtcaaggtgcgccaatatggttctaaatcataaaata
cctccggaaaaaatacttacgctgacattcagcaaggcagcggcccaggacatgaagacc
cggttttgtgatatcttcggaaaagagctggcacgtaatatggtgttttcaaccattcac
agcttttgctacagtgttgtgcgctgctatgttgaaagcaaaaacaaacccatgccccag
attcttgaagacggtgaaggccagatttccaaaaaccagatgttaaagcggatttaccat
gaagtaaacaatgagtatatcagcgacgacaggcttgaggatttgtccaactctgtgagc
tttgtcaaaaatatgctttacactgaggatgatataaaaaaattggatatcggaatcaaa
aattttattgatatttacaatgcatatgaaaaacgtaaaaagtcagaaggatatatagat
tatgacgacatgctcaccgggacttataagcttcttaaaagaaataccgggattactaat
atgttaagagaaaggtaccattatatcaatgtagacgaatcccaggatacatctttggtc
cagcatgaaattataaagcttgttgcccacccaaaaaacaatattttcatggttggggat
gaggaccagagcatttatgggtttagggctgcttttccccaagcgcttcttgattttaaa
aaaacctatcctgatgcaaaaattttattaatggaaagaaactatcgttccacaaagagc
attgtgattccggcaaatatttttataaagcagaacaaagggcgatatgaaaaaaatatg
tatactgaaaatgaagaaggcgaggccgtggtattcaagcatgtaaaaaatcgcaatgaa
cagtatgcatatcttacttcggttttaaaatctgagagtaatttatcggaatgtgccgtt
ctttacaggaataatatttctgccattccactggtggattatctggaatacaacaacata
cctttttatatcagagataccaatcttcattttttcaagcattgggtggtaaatgacgtt
ctttcttttatacggcttgccttggatccttgtgatattgaggcttttgggcaaatttac
tacaaaatcggtgcttttataagccgtgagatgtttgagtatgttgctgagaacatggga
aaggggaagggtgtcatggaaactttgctgaatttccccaatttgcccgaagacacctgt
aatgctgttaaatacttggccggacagattgaaaccattgattatttgaagcctttgaag
gcaatagaatttatagaaaaggaatgtgagtatgaaaaatatattcgcagggcatcaaag
gaaatggggtattccattgatagtcttaattatattattgacggcttaaaatcgatagct
tcaagggttgattccttcgatgagtttttcggaaggctttccatactgaaatcagctatt
gaaaattccggcaaaaacaggtacaaaaatgcagttgttttgactaccatacattcaagc
aagggccttgagtttgacaaagtatatatgattgacctggtggacgggcaatttccgtca
tcaaaaagcataagcgattgcaaggaaggcaacgacgctttgatggaggaagaggtccgg
cttttctatgtgggtgttaccagagcaagaaagtaccttgagcttataactttttcaaag
gtaaataacaagccggtttcggtatcaagatttgttcaccggtttaatcttgtccaaaag
cagactgaaagcagagccctgcccaatgaaatttgcgagggggcaatattggaacatgta
aaattcggacaaggcttggtaaccaggattgatgagtctaaagatttaattgtgattgaa
tttgaaggtgttggaacaaagatgctttccttaaaaacatgtatcgatggaaaaaagata
cagcctgtaaaaatttcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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