KEGG   Clostridium tyrobutyricum: CTK_C27310
Entry
CTK_C27310        CDS       T04331                                 
Symbol
deaD
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
ctyk  Clostridium tyrobutyricum
Pathway
ctyk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ctyk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CTK_C27310 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctyk03019]
    CTK_C27310 (deaD)
   03009 Ribosome biogenesis [BR:ctyk03009]
    CTK_C27310 (deaD)
Enzymes [BR:ctyk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CTK_C27310 (deaD)
Messenger RNA biogenesis [BR:ctyk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CTK_C27310 (deaD)
Ribosome biogenesis [BR:ctyk03009]
 Prokaryotic type
  rRNA helicases
   CTK_C27310 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 CMS1 SWI2_SNF2 UvrD-helicase
Other DBs
NCBI-ProteinID: AND85975
Position
complement(2725456..2726901)
AA seq 481 aa
MNKINFNNFNLSKDILKALEQLGYKNPSEVQEKVIPFILGNKDVIVKSQTGSGKTAAFAI
PICENIQLEERKPQVLVLTPTRELAIQIKQDFSSIGLFKRINCIAVFGKEPSSIQKDRLN
QRVHVIVGTPGRTLDHIKKNNLDVKKIKYLVIDEADEMFNMGFISQVKSIIDKLPKNRST
FLFSATIPKEILELCDSYMNHPNNIEVASKNSIQDKIRQIYYEVESYKKFDLLNKIIYKE
LPDSSIIFCRTKKNVDDLIEKMKNKGYSCSALHGGMLQAHRIDVMEKFKRGEFTFLVSTD
IAARGIDVENITHIINYDIPMEKESYVHRIGRTGRAGNTGVAITLVTPREYRFLHEIALH
YEFNIENGTIPSIEEVERGKQLFKQKSKIPHKPKNHKSEKLNNNVTKIYISAGKKKKIRP
GDIAGAIASIPGINADDIGIINIQDNFSYVDILSDKGTIVLDGLKGKTIKGKSIRAEIAQ
K
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgaataaaataaattttaataattttaatttaagtaaggacatattaaaagcattagaa
caattaggatataaaaatccgtctgaagtccaggaaaaggttataccgtttattcttggc
aacaaggatgtcatagttaaatctcaaactggaagtggtaaaactgccgcatttgctata
ccaatctgtgagaatatacaactggaagaaagaaaacctcaagtgttggtacttacccct
acaagagaattggcaattcaaataaaacaagacttttcaagtataggactattcaaaagg
ataaattgtattgcagtattcggcaaagaaccttccagtattcagaaagatagacttaat
caaagagttcatgtaatagttggcacacccggcagaacactggatcacatcaagaaaaac
aatctggatgtcaaaaaaataaaatatcttgttatagatgaagctgatgaaatgttcaat
atgggatttatatctcaagttaaatccataatagataagctgccaaaaaacagatcaact
tttcttttttccgcaactatacctaaagaaatactggaattatgtgattcatatatgaat
catccaaataatatagaagttgcttcaaaaaattccatacaagataaaatcaggcaaata
tattatgaagttgaatcctataaaaaatttgatttattaaataaaataatatataaagaa
cttccagatagttctataatattctgtaggactaaaaaaaatgtggatgatttaattgaa
aagatgaaaaacaaaggatattcttgcagcgctttacatggtggcatgcttcaggctcat
agaatcgatgtaatggaaaagtttaaaagaggagaatttacttttttagtatctaccgat
attgccgccagaggaattgatgtggaaaatataactcatataataaactatgatatacct
atggaaaaggaaagttatgtccatagaattggaagaaccggtcgtgctggaaatacaggt
gttgctataactttagtaactcccagggaatatcgatttttacatgaaatagccctgcat
tatgaatttaatatagagaatggtacaataccatccattgaagaggttgaaagaggaaag
caattattcaaacagaaatcgaaaattccacataaacccaaaaaccataaatctgaaaaa
ttaaataataatgttaccaaaatatatataagtgccggcaagaagaaaaaaataagacct
ggtgatatagcaggagctattgcaagtattccaggtataaatgcagatgacataggcata
ataaatatacaggacaatttttcctatgtagacatactctcagacaaaggtactatagta
ttggatggactaaaaggcaaaactataaaaggtaaaagcataagggctgaaatagcacaa
aaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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