KEGG   Corynebacterium ulcerans 0102: CULC0102_0864
Entry
CULC0102_0864     CDS       T02171                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
cue  Corynebacterium ulcerans 0102
Pathway
cue03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cue00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CULC0102_0864 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cue03400]
    CULC0102_0864 (mfd)
Enzymes [BR:cue01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CULC0102_0864 (mfd)
DNA repair and recombination proteins [BR:cue03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      CULC0102_0864 (mfd)
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID ResIII RecG_dom3_C AAA_22 UB2H DUF3638 AAA_30
Other DBs
NCBI-ProteinID: BAM27063
Position
899674..903465
AA seq 1263 aa
MSTDNAAANSHHPAMLAGLLKVAATDPKIKGLLEHVGDPALHITGIDQSRPWAIGALSHR
APVLVITATGREAEDLTAELRAMLGDSVAWFPAWETLPHERLSPAADVAGQRARILSHLN
DLRVVVTAARGISQPILQNAEGRNALLLEAEKDYDLEELTRQLVFRAYQHVDLVAKRGEF
ATRGGILDIFPTTMDRPVRLEFWGDEITEIREFSVADQRAIPDSSHGAVEIFPARELLVT
PGVAERAGDLALKYQGNPTLQELLSKLAEGTPADGMEALIPALVDTPLVTLPELMPQGTH
VIAVGPEKIRTRVADLQATDAEFLAAGWEAAAMGAAGPVAAQGLDLEASSYRSYESLEIS
ARQAGCSWWTFAPSGMFEADDADTLPLDFEAGPTPRGDLSQIEEMMSLLLAHTTAGGRAA
FIAPAKGAIKRMVDRFKEKGIPTKVATPGWEPTPGEVTLYQALSHAGLVFPKVRKKAGTE
ALPLVVVTETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKTGDFVVHETHGIGRFLKMTE
RTITSGDETSRREYIVLEYAPAKRGQPADQLFVPMDSLDLLSKYVGGEKPSLSKMGGSDW
KNTKKKARAAVREIAGELVELYAKRQSAPGHPFAPDSPWQHEMEDNFPYVETEDQMMAIE
AVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVVLVPTTLLAQQHLSTFD
ERMAGFPVNLRGLSRFTSTIEAKETIKGLADGTVDIVIGTHRLLQTGIQWKNLGLVIVDE
EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTYV
GAQEDKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARDLRDLVPEARIVVAHGQMSEELL
EQTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERG
YAYFLYPKGQTLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGV
GFDLYVRLVGEAVEAYRALADGKIIDATDDGPKEIRIDLPVDAHIPESYINAERLRLEVY
RKLAASQSNADLILAVEEMEDRYGPLPEEVKRLLAVARLRHLARSAGISDIGVQGTRIKI
HPVELPDSKQVRLKRLLPSATYRAAAKAIQLSFPKEGRNVTDKPLRDVALLQWVADFLSE
MFEIPRISVTGEAVPEKIISVGESPSPGRARTAQRTVTRRSERNDDEDYEDKREARRRKY
RMR
NT seq 3792 nt   +upstreamnt  +downstreamnt
ttgtcaactgataacgcagccgctaacagccaccatcccgccatgcttgcggggctactc
aaagttgcggcgacagaccccaaaatcaagggactgctggaacacgttggtgacccagcg
ctgcatattaccggcatagatcaatctcgtccctgggctatcggagcgttatctcaccga
gccccagtactcgttatcacggcgaccgggcgtgaagccgaggatctcactgcggaactt
cgggcaatgctgggggactctgtagcttggttccccgcatgggagactcttcctcacgag
cgtcttagcccagccgccgatgtggcgggtcagagggctaggatcttgtcccatctgaat
gatttgcgcgtggtggtgacagccgcacgcggcattagtcaaccgattcttcagaacgca
gaggggcgtaatgccctccttcttgaggctgaaaaagattatgacttagaagagctcact
cgacagctcgtttttagggcttatcagcacgttgatcttgtggctaagcgcggggagttt
gctacccgaggcggaatcctcgatatattccccacgacgatggatcgacctgttcgctta
gaattctggggagacgagatcacggagatccgggaattctcagtggctgaccagcgggca
atcccggattcttcccacggagctgtggaaattttccctgctcgcgaactcctcgtcaca
cccggcgtagcagagcgcgccggcgatttagcgttgaagtatcagggaaaccccaccctg
caagaacttttatccaagctggcggagggcactccggcagacggcatggaagcgcttatc
ccagcgctcgtagatacccctttggttactcttcctgagctcatgccacagggcacacac
gtgatagcagtcggcccagaaaaaattcgcaccagggtggcggatttgcaggccaccgac
gcagagttccttgcagcgggatgggaggccgcagcaatgggtgccgctgggccggttgct
gcccaaggactagacctagaagctagctcctatcgctcgtatgagtctttagaaatatcc
gcgcgccaggcggggtgctcatggtggacctttgcgccttccggcatgtttgaagcagac
gatgcggacactcttcccctcgactttgaagcaggtcccaccccgcgcggtgatctctct
cagattgaagagatgatgtccctgctgctagcccataccaccgcaggcggtagggctgcc
tttatcgccccagctaagggtgcgatcaaacgcatggtggataggttcaaagaaaaaggc
atccccacaaaggtagccacaccgggctgggagcccacgccgggagaagtgactctctac
caggcgcttagccacgctggcctcgtctttcccaaagtccgtaaaaaagctggaaccgag
gcattgcctcttgtcgtcgtcacagagaccgatctcaccggtaaccgcgtgggcgatatc
gcaggagcaaagcgtcgtccagctaaacgacgcaaccgcgtagatccgctcgcgctgaag
accggcgactttgtggtgcatgaaacccacggcatcggtcgattcctcaaaatgactgag
cgcacgattacgtcaggggacgagacctcgcgacgggaatacatcgttctggaatacgca
ccggcaaaacgcgggcagcccgcagatcagctttttgttcccatggactcccttgatctc
ctgagcaaatacgtgggaggcgagaaaccctcgttatccaagatggggggctccgattgg
aagaacactaagaaaaaggcccgcgctgcagttcgggaaatcgccggtgaactcgttgag
ctttatgccaagcgacaatccgcgccgggacacccctttgcacctgattccccctggcaa
catgagatggaagacaactttccatacgttgaaactgaagaccagatgatggccatcgag
gcggtcaaagcggatatggaaaaacccgtccccatggatcgcgtcatcgtaggagacgtg
gggtacggcaagacagaagttgctgtgagggccgcttttaaggctgttcaggatggcaaa
caagtggtagtcctcgttcctaccacgttgctagcgcagcagcatctgtccacgtttgat
gaacgtatggccggattcccggtgaatctgcgtggcttaagccgttttacctccacgatt
gaagcaaaagaaaccataaaagggcttgccgacggcaccgtggatatcgtgatcggtacg
catcgcctgcttcaaacaggaattcagtggaagaacctcggactggtcatcgtcgatgag
gaacaacgttttggtgtggagcataaagaacacatcaaagcactgcgtactcatgtcgat
gtgctgacaatgtctgccacaccgatcccacgaactttggaaatgtctatggctgggatc
cgcgagatgtcgaccattttgactcctcccgaggatcgccaccccatcttgacgtatgtt
ggcgcacaagaagataaacaaatcgctgcagctatccggcgcgaattgttgcgtgacggc
caggtgttctttgtacataacaaggtctccgatattgaaaagaaagctagagacctgcga
gacctagtgccggaagctcgtattgttgttgcgcatggtcagatgagtgaggaactactg
gaacaaactgtccaggggttctgggatcgtgaatttgatgtgctggtgtgcaccaccatc
gtggagactggtttggatattgccaatgccaataccctcatcgtggagaacgcacatcat
atgggactttcgcagcttcatcagctgcgcggacgcgtagggcgttcccgggaacgtggt
tacgcgtacttcctgtatcccaagggacaaacactgacggaaaactcctacgaccgcctg
gccaccatcgctcagaacaacgatttgggtgctggtatggcagtggccatgaaagacctg
gaaatgcgaggcgccggtaacgtacttggtgcgcagcaatctggccatatcgcaggcgta
ggatttgatctttatgtgagacttgtcggtgaagccgtggaggcctaccgagcccttgca
gacggaaaaatcatcgatgccaccgatgacgggccaaaagaaatccgcatcgatttgccg
gtggatgcgcacatcccagagtcgtatatcaacgcagaacgactccggcttgaggtgtat
aggaagctggcggcgtcgcaaagcaatgccgatctgatactcgcagtagaagagatggag
gatcgctacggaccattgcctgaagaggtcaaacgcctcctggctgtggcccggctacgg
cacctcgccagatccgcgggcatcagcgacattggtgtgcagggaacgcggatcaagatc
catccggtggaactcccagattccaaacaagtccggcttaaacggctactgccttccgca
acgtatcgcgctgcggctaaggctatccagctgtcctttcctaaggaggggcgaaacgtt
accgataagccgcttcgcgacgtcgccctgctccaatgggtagcagacttcctatcggaa
atgtttgaaataccacgcatctcagttactggggaagccgtgcctgaaaaaatcatctcc
gtgggggaatcacccagccctgggcgggcgcgcactgctcaacgtaccgtcactagacgg
agcgagcgtaatgacgacgaggactatgaggacaaacgtgaagcgcgtaggaggaagtat
cggatgcgttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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