KEGG   Cupriavidus necator NH9: BJN34_10515
Entry
BJN34_10515       CDS       T05121                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cuh  Cupriavidus necator NH9
Pathway
cuh03030  DNA replication
cuh03410  Base excision repair
cuh03420  Nucleotide excision repair
cuh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cuh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BJN34_10515 (ligA)
   03410 Base excision repair
    BJN34_10515 (ligA)
   03420 Nucleotide excision repair
    BJN34_10515 (ligA)
   03430 Mismatch repair
    BJN34_10515 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cuh03032]
    BJN34_10515 (ligA)
   03400 DNA repair and recombination proteins [BR:cuh03400]
    BJN34_10515 (ligA)
Enzymes [BR:cuh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BJN34_10515 (ligA)
DNA replication proteins [BR:cuh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BJN34_10515 (ligA)
DNA repair and recombination proteins [BR:cuh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BJN34_10515 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BJN34_10515 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     BJN34_10515 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BJN34_10515 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT BRCT_2 HHH 5_3_exonuc
Other DBs
NCBI-ProteinID: AQV94321
UniProt: A0A1U9UPZ4
Position
1:complement(2314667..2316796)
AA seq 709 aa
MTATHRGAQADASAPVGALPPEAAARRVAWLRDELDRHNHQYYVLDAPTIPDAEYDALFS
ELQALELEHPELQTPDSPTQRVGGEPLSAFDSVRHRVPMLSLNNGFADEDVLNFDRRCAQ
GLGRTAPAAGEQDLFSAADAVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTV
NVRTIKAIPLKLRGQAPAVLEVRGEVFMFRRDFDKLNERQAEAGEKTFVNPRNAAAGSLR
QLDPRITARRPLSFFAYGLGELQGVDRPPTHSAMLDGFAALGLPVCKDREVVKGAQGLLD
FYRDIGQRRDALPYDIDGVVYKVNALADQERLGFVSRAPRFALAHKFPAQEMTTIVEDIE
VQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVHIGDTVIVRRAGDVIPEVV
GVVTERRPADARAFVMPTACPVCGSHIEKLEDEAIARCTGGLICAAQRKQSLLHFAQRRA
MDIEGLGDKLVEQLVDQGIVRTPADLFKLGVAKLAALERMADKSAANLVAAIDTSRETTM
NRFIFALGIRHVGEATAKDLAKHFGKLDALMAADEAALLEVNDVGPVVAQSIAHFFAEPH
NVEVIEQLRAAGVHWTESEPAAKATAPLSGKTFVLTGTLPTLSREDAKELLEAAGAKVAG
SVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAGMLALLAEAGAAPTQD
NT seq 2130 nt   +upstreamnt  +downstreamnt
atgaccgcaacacaccgcggcgcgcaggcagatgcctccgcgcccgtcggcgccttgccg
cccgaagctgcagccaggcgcgtggcctggctgcgcgacgagctggaccgccacaatcac
cagtattacgtgctcgacgcgccgaccattcccgatgcggaatacgacgcgctgttcagc
gaactgcaggccctggagctcgagcatcccgagctgcagacgccggactcgcccacgcag
cgcgtgggcggtgaaccgctgtccgccttcgactcggtgcgccaccgcgtgccgatgctg
tcgctcaacaacggcttcgccgacgaagacgtgctgaacttcgaccgccgctgcgcgcag
ggcctgggccgcaccgcgcccgccgccggcgagcaggacctgttcagcgcggccgacgcg
gtcgagtacgcctgcgagctgaagttcgacggcctggccatgtcgctgcgttatgaggac
ggccggctggtgcaggccgctacccgcggcgatggcgagaccggcgaggacgtcaccgtc
aacgtgcgcaccatcaaggcgatcccgctgaagctgcgcggccaggcgcccgcggtgctg
gaagtgcgcggcgaggtcttcatgttccgccgcgacttcgacaagctcaacgagcgccag
gccgaggccggcgagaagaccttcgtcaacccgcgcaacgccgccgcgggcagcctgcgc
cagctcgatccgcgcattaccgccaggcggccgctgtcgttcttcgcctatggcctgggt
gagttgcagggcgtggatcgcccgccgacccacagcgccatgctcgacggctttgccgcg
ctgggcctgcccgtgtgcaaggaccgcgaggtggtgaagggcgcgcaggggctgctggac
ttctatcgcgatatcggccagcgccgcgacgcgctgccgtatgacatcgacggcgtggtc
tacaaggtcaatgcgctggccgaccaggagcgcctgggctttgtctcgcgcgcaccgcgc
tttgcgctggcgcacaagttcccggcgcaggaaatgaccaccatcgtcgaggacatcgag
gtgcaggtcggccgcaccggcgcgatcacgccggtggcacggctcaagcccgtctttgtc
ggcggcgtgaccgtgaccaatgccacgctgcacaacgaggacgagatccgccgcaaggac
gtgcatatcggcgacaccgtgatcgtgcgccgcgccggcgacgtgatcccggaagtggtc
ggcgtggtgaccgagcgccgcccggccgacgcacgcgccttcgtgatgccgaccgcctgc
ccggtgtgcggctcgcacatcgagaagctcgaggacgaagccatcgcccgctgcaccggc
gggctgatctgcgcggcgcagcgcaagcagtcgctgctgcatttcgcgcagcggcgcgcc
atggatatcgaaggcctgggcgacaagctggtcgaacaactggtcgaccagggcatcgtg
cgcacgccggctgatttgttcaagctgggcgtggccaagctggctgcgctggagcgcatg
gccgacaagtcggcggccaacctggtggcggcgatcgacacgtcgcgcgagaccaccatg
aaccgctttatcttcgcgctgggcatccgccatgtgggcgaagccacggccaaggacctg
gccaagcatttcggcaagctggatgcgctgatggcggctgatgaagcggcgctgctggag
gtgaacgacgtcggcccggtggtggcgcagtcgatcgcgcacttctttgccgagccgcac
aatgtcgaggtcatcgaacaactgcgcgccgcgggcgtacactggacggaaagcgagccg
gcggccaaggccacggcgccgctgtcgggcaagactttcgtgctgaccggcacgctgccc
accctgtcgcgcgaagatgccaaggagctgctggaagccgccggcgccaaagtggcgggt
tcggtatcgaagaagaccgactacgtcgtcgcgggcgctgaagccggcagcaagctcgac
aaggccgaggcgctgggcgtgccggtgctggacgaggccggcatgctggcgctgctggca
gaagccggcgccgcgccgacacaggactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

Download RDF
DBGET integrated database retrieval system