KEGG   Chromobacterium violaceum: CV_1585
Entry
CV_1585           CDS       T00147                                 
Symbol
rho
Name
(GenBank) transcription termination factor rho
  KO
K03628  transcription termination factor Rho
Organism
cvi  Chromobacterium violaceum
Pathway
cvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CV_1585 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cvi03021]
    CV_1585 (rho)
   03019 Messenger RNA biogenesis [BR:cvi03019]
    CV_1585 (rho)
Transcription machinery [BR:cvi03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CV_1585 (rho)
Messenger RNA biogenesis [BR:cvi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CV_1585 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 OB_RNB NACHT AAA AAA_22 AAA_5
Other DBs
NCBI-ProteinID: AAQ59261
LNCC_Brazil: CV1585
UniProt: Q7NXP1
Position
1708629..1709885
AA seq 418 aa
MHLSDLKHLHVSELVEMAISNEIDGANRLRKQDLIFALLKNQAKKGESIFGEGTLEVLPD
GFGFLRSPDTSYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRTPKDGERYFALVKVDKVN
GEAPENSKHKILFENLTPLFPTEQFKLEREIRAEENITGRIIDLISPIGKGQRALLVAPP
KSGKTVMLQHIAHAITANHPEAVLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIVATALIDTGSRMDDVIYEEFKGTGNSEIHLDRRMAEKRIFPALNI
NRSGTRREELLVPQDQLQRIWVLRKLLYPMDDLEAMEFLQDKIKATKSNQAFFDSMRR
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgcacttatctgatctcaaacatctccacgtatccgaactcgttgaaatggccatttcc
aacgagatcgacggcgccaaccggttgcgcaagcaggacctgatctttgcgcttttgaag
aaccaggccaagaaaggcgagagcattttcggcgagggtacgctggaagtgttgccggac
ggcttcggtttcctgcgcagtccggatacctcctatctggccggtcccgacgacatctac
gtcagcccgtcgcagatccgccgcttcaacctgcataccggcgattcgatcgagggcgag
atccgcacgccgaaggacggcgagcgctacttcgcgctggtgaaggtggacaaggtcaac
ggcgaggcgccggaaaactccaagcacaagatcctgttcgagaacctgacgccgctgttc
ccgaccgagcagttcaagctggagcgcgagatccgcgccgaggaaaacatcaccggccgc
atcatcgatctgatctcgccgatcggcaagggccagcgcgcgctgctggtcgctccgccg
aagtccggcaagaccgtgatgctgcagcacatcgcccacgcgatcaccgccaaccacccg
gaggcggtgctgatcgtgctgctgatcgacgagcgtccggaagaagtgacggaaatgcaa
cgctcggtgcgcggcgaagtggtgtcctccaccttcgacgagccggccacccgccacgtg
caagtggccgagatggtgatcgagaaggccaagcgtctggtcgagcacaagaaggacgtg
gtgatcctgctggattccatcactcgcctggcccgcgcctacaacaccgtggtgccggcg
tccggcaaggtgctgaccggcggcgtggacgccaacgcgctgcagcgtccgaagcgtttc
ttcggcgccgcgcgcaatgtggaagagggcggcagcctgactatcgtcgccaccgcgctg
atcgacaccggcagccgcatggacgatgtgatctatgaagaattcaagggcaccggcaac
agcgaaatccacctggaccgccgcatggccgagaagcgcatcttcccggcgctgaacatc
aaccgttccggcacccgccgcgaggagctgctggttccccaggaccagttgcagcgcatc
tgggtgctgcgcaagctgctgtacccgatggacgacctggaggcgatggaattcctgcag
gacaagatcaaggccaccaagtcgaaccaggctttcttcgactcgatgcgccgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   LNCC_BRAZIL (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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