KEGG   Cycloclasticus sp. P1: Q91_0680
Entry
Q91_0680          CDS       T02265                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cyq  Cycloclasticus sp. P1
Pathway
cyq03030  DNA replication
cyq03410  Base excision repair
cyq03420  Nucleotide excision repair
cyq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cyq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Q91_0680
   03410 Base excision repair
    Q91_0680
   03420 Nucleotide excision repair
    Q91_0680
   03430 Mismatch repair
    Q91_0680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cyq03032]
    Q91_0680
   03400 DNA repair and recombination proteins [BR:cyq03400]
    Q91_0680
Enzymes [BR:cyq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Q91_0680
DNA replication proteins [BR:cyq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Q91_0680
DNA repair and recombination proteins [BR:cyq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Q91_0680
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Q91_0680
   MMR (mismatch excision repair)
    DNA ligase
     Q91_0680
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Q91_0680
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT HHH_3 zf-NADH-PPase
Other DBs
NCBI-ProteinID: AFT66718
UniProt: K0C2H3
Position
705404..707425
AA seq 673 aa
MTMHDDVKRRVQTLREEINQHNQNYYQYDAPKIPDADYDALLRELQLLEAENPELMSDDS
PTQRVGSAPLDSFQQVEHAVPMLSLDNAFDDDEFEAFDKRVRERADGFEDIEYLVEPKLD
GLAISLLYADGVLVRAATRGDGKRGEDVTENVKTIGAIPLSLKGDNLPLRLEVRGEVFMP
LSGFQQLNQQALALGEKPFANPRNAAAGSLRQLDSKITATRPLAFYSYGIGVVEGYELPQ
TQQALFQLLATWGLPVSDQVTTARGMQQCHQAYQVLAQKRALLPYEIDGVVYKVNDFALQ
KAIGFVSRAPRWAIARKFPAQEKMTEVIGIDVQVGRTGAITPVARLAPVFVGGVTVTNVT
LHNEGEMRRKDVRVGDTVIVRRAGDVIPEIVSVVLEKRKPASQLFEMPVSCPVCGSTVER
AEGEAIARCPAGLFCRAQVKESIKHFASRKAMDIDGLGDKIIEQLVAQDLVKTPADLYRL
THEQLSSLERMADKSASNIIAALEKSKVTTLPKFLYALGIREVGEVTAASLSSYFGQLDV
IQSATVEELEKVPDVGPIVAQHIVAFFELAHNREVIASLKNLGVSWPNVEAVPQDDQALS
GKVFVLTGTLSTMGRIEAKEALQLLGAKVTGSVSKKTDYVVAGEDAGSKLKKAQSLGVTV
LSEDDLIKLIAKD
NT seq 2022 nt   +upstreamnt  +downstreamnt
atgacaatgcatgacgatgttaagcgacgtgtgcagacgctacgtgaagagataaatcaa
cataaccagaattattatcagtacgacgcaccaaaaattcctgatgccgattacgatgcc
ttattgcgagagcttcagttattagaggctgaaaacccagagctaatgagtgatgattcg
ccgacgcagcgcgtcggttcagctccgttagactcatttcagcaggtagagcatgcggtg
ccgatgctgtcattagataatgcctttgacgatgatgagtttgaggcatttgataagcga
gtgcgagagcgagctgacgggtttgaagatatcgaataccttgtcgagccgaaattggat
ggcttagctatttctttgttgtatgcggacggtgtgttagtacgtgctgcaacaagaggg
gatggtaaacgaggcgaagacgttaccgaaaatgttaaaactattggtgccattccactc
agtttaaaaggcgataatctaccattgaggctagaggtcaggggtgaagtgtttatgccg
ttgtctggttttcagcagctgaatcaacaggcattggcgttaggtgaaaagccttttgct
aatccaagaaatgccgctgcaggtagtttgaggcagctagattcaaaaataacagcaacc
cgtccactggctttttatagctatggtattggggtggtagagggttacgagctaccgcag
acacaacaggcgctgtttcagctgttggctacatggggtttgccagtgagtgatcaggtg
acgacagcaaggggcatgcagcaatgtcaccaagcctatcaagtgttggcgcaaaaaaga
gcgctattaccttatgagattgacggggtcgtttataaagttaacgattttgccttgcag
aaagccattggttttgtgtcaagagcgccgcgttgggcaatagcacgtaaatttccagca
caagaaaaaatgaccgaagtaatagggattgatgtgcaagtgggtagaacaggagccatt
acgccggttgctcgattggcacctgtttttgttggtggggttaccgttacgaatgtcacg
ttacataacgaaggtgaaatgcgcaggaaagatgttcgtgtgggtgatacggtgattgtc
aggcgtgccggcgatgtgattccagaaattgtttctgttgtattggaaaagagaaagcct
gcatcgcagctttttgaaatgccagtgtcttgtcctgtgtgcgggtcaacagtggagcgc
gccgagggagaggcgatcgcacgttgtccagctggcttgttttgtcgtgctcaagtgaaa
gagtcgatcaagcattttgcctcacgtaaggcgatggatatagatgggttgggtgacaag
attattgagcaattagtcgctcaggatttagttaaaacgccggctgatttgtatcgatta
actcacgagcagttgtcgagtttggagcgaatggccgataagtctgccagtaatattatc
gcggcacttgaaaaaagcaaggtaacgaccctgccgaagtttctgtatgcgttgggtatt
cgagaagtaggcgaggtgactgcggcaagcttatcgagctattttggacagctggatgtg
atacagagtgccactgttgaagagttggagaaggtgcctgatgttgggcctattgttgca
caacatatcgtggctttctttgagttggcgcataaccgtgaggtaatagcgagcttgaaa
aacttaggggttagttggcccaatgttgaagcagttccccaagatgatcaggctttatca
ggtaaagtctttgtgttgaccggtacattgtcgacgatggggcgtattgaagcgaaagaa
gccttgcaattattgggtgcaaaagtgactggaagcgtctcgaaaaaaaccgattatgtt
gttgccggggaggatgctggttcaaagttgaaaaaagcccagtcgctaggggtgacggta
ttatcagaagacgatttaataaagctaatagcaaaggactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (70)   

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