KEGG   Cycloclasticus sp. P1: Q91_0837
Entry
Q91_0837          CDS       T02265                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
cyq  Cycloclasticus sp. P1
Pathway
cyq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cyq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Q91_0837 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cyq03400]
    Q91_0837 (mfd)
Enzymes [BR:cyq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Q91_0837 (mfd)
DNA repair and recombination proteins [BR:cyq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Q91_0837 (mfd)
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID MFD_D3 ResIII SNF2-rel_dom UB2H ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: AFT66875
UniProt: K0C2Z9
Position
complement(874619..877924)
AA seq 1101 aa
MESEQLLVVICSDTQSALRLEREVPFFLTTPLPVIYFPDWEVLPYDSFSPLGEIISERLA
TLYKLQSLNKGILIVTTACLLQRLAPRDQLLNECFSLSTGQQFNIEKTCLNLDKLGYQNV
HSVHEYGEYSVRGAILDMFPMGSKKPYRIDLFDDEVESIRTFDTETQRSIDKVDSIQLFP
AREFPINDKSIQLFRQQFRDQFPNVSDKNTLYQQVSKGNIPNGIENYLPLFVEHTESFFD
YIPKATLILHGDILAAGETFATQVIERFQHRQRDIDRPALRPELLFHDLESLQQRMANYP
SASLQSDIHETEKTALINTDKNDPAHPLLDLLNKQKHKTLFVAESAGHRESMRQQLQKLN
VRPTLVEDWATFVQNDVSPCIVVAPIDEGLSSSTVSIITENNLLGTRVQQRRRRRSSSNQ
RLENVFNSLADLEIGSPVVHQEHGVGRYIGLKHLVVDEIETEFLTLEYANSDKLYVPVSS
LNLIGRYMGTQGDSAPLHRLGSDQWEKARKKALKRARDVAAELLDIHARRAAKPGRPMVT
ESTEYDNFARAFPFEETEDQATAIEQTLHDMSLAKPMDRVVCGDVGFGKTEVAMRAAFTC
ANNHYQTAVLVPTTLLAQQHYQNFSDRFADWPIRIEVLSRFVSSKKQNQIIADTAEGKVD
ILIGTHKLLQKSLTYKNLGLVIIDEEQRFGVRHKEYLKSMRSEVDMLTLTATPIPRTLNQ
AMSGLRDISIIATPPPNRHAIETFVSEWNSGLIQEACQREIRRGGQLFVLHNDIATMDRV
IRDIEELVPDANIRKAHGQMRESELEHIMLDFYHARFNVLVSTTIIENGIDLPNANTIII
NRADKLGLSQLHQLRGRVGRSHHRAYAYMIVPPEGVMTKDAKKRIDAIQSSADLGAGFTL
STHDMEIRGAGELLGDNQSGEIQEIGFTLYTELLDNAVAAIKSGKQPELEERIETGPEID
LSASALIPDDYLPDVHTRLVLYKRIASADDAEELRDLQVEMIDRFGLLPDSTKCLFGISE
IKQQAKRIGIDKIDFAKSNGRLIFSNAPSIDPAKIIELIQTQPQIFKLDGPQKLRFSKKL
NTTEEKVEFILDLINSIALSK
NT seq 3306 nt   +upstreamnt  +downstreamnt
atggagtcggagcaattactggtggttatttgttcagatacccaatcggcactgagatta
gaacgagaagttcctttttttctaaccacgcctttgccggttatttattttccagactgg
gaagtcttaccttatgatagcttttctcctctaggcgaaattatttctgaaaggctagcg
actttatacaaactgcaaagcctaaataaaggcatactcattgtcaccaccgcttgctta
ctacaacggttagcgccacgtgatcaacttttaaatgagtgcttttcactctcaacaggt
caacaattcaatattgaaaaaacctgcctaaatctagacaaattaggctaccagaacgtg
cactctgttcatgaatatggtgaatactccgttcgaggagctattttagacatgttccca
atgggcagcaaaaagccctatagaattgatttgtttgatgatgaagtagagtccatccgt
acgtttgacaccgaaacccaacgctccattgataaagttgactccattcaactatttccc
gcaagagaattccctattaatgacaaaagcattcaacttttccgccaacaatttagagac
cagttcccaaatgtgtctgataagaacaccttatatcaacaagtctctaaaggtaatatc
cctaatggtatagaaaactatttgcccttatttgtagaacataccgaatcattttttgat
tacatcccgaaggccactctcatcttgcacggtgatatcttagctgctggagaaacattt
gccacacaggtcattgagcgatttcaacacaggcaacgtgatatagatcgcccggcattg
cgcccagaattactgtttcacgacttagagagcctgcaacaaagaatggccaattacccc
tctgcttcattacaaagtgacatccatgaaacagaaaaaacagccttaatcaataccgat
aaaaatgacccggcacaccctttattagacttattaaacaaacaaaaacataaaactttg
tttgttgcggagtctgcggggcatcgtgaatcaatgcgtcagcaactacaaaaactaaat
gtacgccctaccctcgttgaagattgggcgacgtttgttcaaaacgatgtatccccctgc
attgtcgttgcaccgatagatgaaggccttagctcctctaccgtcagcatcattacggaa
aacaacctattaggcacacgtgttcaacaacgtagacgcagacggtcctcctctaaccaa
cgacttgaaaatgtatttaacagcttagccgaccttgaaatcggctcccctgttgttcac
caagaacatggtgttggtcgatacatcggcttaaagcacttagttgtagacgagattgaa
accgaatttttaaccttagaatatgccaatagcgataaactctatgtgcctgtttcatcg
cttaatttaattggtcgatacatgggcacccaaggggatagcgccccattacatcgattg
ggtagtgatcagtgggaaaaagcacgcaaaaaagcactgaaacgtgcacgcgatgtcgcc
gcagaattattagacatccatgctcgacgcgccgccaaacctggccgcccaatggttact
gaatcaaccgagtacgataactttgcccgtgcatttccgttcgaagaaaccgaagatcaa
gcaaccgctattgaacaaacactacatgacatgagcctggctaaaccaatggaccgtgtt
gtttgtggtgatgtggggtttggtaaaacagaagtggctatgcgcgcggccttcacctgt
gccaataatcactaccaaactgccgttttagtgccaaccaccttacttgctcaacagcat
tatcagaatttttccgaccgttttgccgattggcccattcgcattgaagtactttcacgg
tttgtcagcagcaaaaagcaaaatcaaattattgctgataccgccgaagggaaagttgat
attcttattggcacccataaattattacaaaaatcattaacctacaaaaaccttggttta
gtgattattgatgaagaacaacgctttggcgtgcgccataaggaatatttaaaatccatg
cgctctgaagtggacatgcttacactcaccgctaccccaatacccagaacacttaatcaa
gccatgtctggattacgcgatatttccatcattgcaacaccaccaccgaatagacatgct
atcgaaacctttgtatctgaatggaatagtggactgattcaagaggcctgccaacgtgag
ataagacgcggcggtcaactgttcgttcttcataacgacattgctacaatggatagggtt
attcgtgacattgaagaactagtacccgacgccaacattcgaaaagcacacgggcaaatg
cgtgaaagcgaattagagcatatcatgctcgacttttatcacgctcgatttaacgtactg
gtgtctacgacgattatcgaaaatggtattgatttacccaatgccaataccattattatt
aaccgcgccgataaactcggtttatctcaattgcatcaattaagaggtcgggttggccgc
tctcatcatcgtgcatacgcatacatgatcgtaccgcccgaaggtgttatgactaaagat
gcaaaaaaacgtattgatgcaatccaaagcagtgccgacctaggtgctggctttacctta
tcaacgcacgatatggagattcgtggtgcgggtgagttactgggcgacaaccaaagtggg
gaaatccaagaaattggctttaccttatataccgagttactggataacgcagtagccgca
ataaaatcaggtaagcaaccagaacttgaagaacgtatcgaaacaggaccagaaatagac
ctgtctgccagcgcattaatccccgatgattatttaccggacgttcacacacgtcttgtg
ttgtacaaacgaattgctagtgcagatgatgcagaagaactaagggacttacaagtcgag
atgatagatcgttttggccttctaccagacagcacaaaatgcctctttggtatcagcgag
ataaaacaacaggctaaacgtattggtattgataaaattgattttgccaaatccaatggg
cgattaatattttcaaatgccccatcgatagaccctgcaaaaataattgaattgatccaa
acacaaccacaaatttttaaattggatggacctcaaaaattacgttttagtaaaaaactt
aataccactgaagagaaagttgagtttatactcgacctcattaactctatcgcattgagc
aagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   RefGene (59)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (79)   

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