KEGG   Delftia acidovorans: Daci_0510
Entry
Daci_0510         CDS       T00620                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
dac  Delftia acidovorans
Pathway
dac03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dac00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Daci_0510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dac03021]
    Daci_0510
   03400 DNA repair and recombination proteins [BR:dac03400]
    Daci_0510
Enzymes [BR:dac01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Daci_0510
Transcription machinery [BR:dac03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Daci_0510
DNA repair and recombination proteins [BR:dac03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Daci_0510
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 DUF5887 Hint
Other DBs
NCBI-ProteinID: ABX33156
UniProt: A9BR98
Position
539519..543631
AA seq 1370 aa
MAYSYTERKRIRKSFGSRDSVLEVPYLLQMQKDAYTAFLQSDVAPKKRTIEGLQAAFNSA
FPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKV
VKEVKEQEVYMGEVPLMTEKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS
ARIIPYRGSWLDFEFDPKDLLFFRVDRRRKMPVSILLKAIGLTPESILANFFVNDNFRLM
DSGAQMEFVSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQSGTKFISVPEDFL
IGRVVAKNIVDPDTGEIIAKANEELTESLLKKLRSAGIQDLQCIYTNELDQGAYISQTLR
TDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKVGRD
GATGPMVLSNEDILAVVKILVDLRNGKGEVDDIDHLGNRRVRCVGELAENQYRTGLARIE
KAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSA
LGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYR
RVADGKVTMEIDYLSAIEEGKYIIAQANAELDAEGRLIGDLVSAREKGDSTLVSAERVQY
MDVSPAQIVSVAASLIPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTGIERVAAVDS
GTVVTATRGGIVDYVDATRIVVRVNDAEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVK
RGDKLAKGDVVADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILINERVVAEDRYTSIH
IEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDVLVGKVTPKGE
TTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGIQRDKRAQQIIDDE
LKRYRLDLNDQLRIVEADAFDRIEKLLNGRVANGGPQKLAKGAKIDKAYLDGVEKFHWFD
IRPAEDEVATQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRR
LQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGSTADIVLNPLGVPSRMNIGQVLEVHLGW
AGKGLGQRIGDMLQQEARAAEIRTFMEEIYNSRGRKEDLTQLDDKEIVSMAQALTTGVPF
ATPVFDGASEQEIQDMLHLAYPEELAQRKGLTESRTQAYLYDGRTGDRFERPTTIGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLT
VKSDDVVGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS
NT seq 4113 nt   +upstreamnt  +downstreamnt
atggcctattcttacaccgaacgcaagcgaatccgcaaaagcttcgggagccgcgacagc
gtgctcgaagtgccttacctgctgcagatgcaaaaagatgcatataccgcattcttgcag
tcagatgtagcccccaaaaaacgcaccatcgaaggcctgcaagcggccttcaactccgcc
ttccccatcgtctcccacaacggttttgtggagatgaagttcgtcgagtacaacctcgcc
aagcctgctttcgatgtgcgcgagtgccagacccgtggtctgacgttcgcctccgccgtg
cgcgccaaggtccagttgatcatctatgaccgtgagtcttcgacctcgcagtccaaggtg
gtcaaggaagtcaaggagcaagaggtctacatgggcgaagtgcccctgatgaccgaaaag
ggctcgttcatcatcaacggcaccgagcgtgtcatcgtctcgcagctgcaccgctcgcct
ggcgtgttcttcgagcacgacaagggcaagacccacagctcgggcaagctgctgttctcg
gcacgcatcattccttaccgcggctcgtggctggacttcgagttcgaccccaaggacctg
ctgttcttccgcgtcgaccgtcgccgcaagatgcccgtgtccattctgctgaaggccatc
ggcctgacgccggaatcgatcctggccaacttcttcgtcaacgacaacttccgcctcatg
gattcgggcgcgcagatggagttcgtctccgagcgcctgcgcggcgaagtcgcgcgcttc
gacatcaccgacaagtcgggcaaggtcgtggtcgccaaggacaagcgcgtcaccgctcgc
cacacgcgtgagctggagcagtcgggcaccaagttcatcagcgtccccgaagatttcctg
atcggccgcgtggtcgccaagaacatcgtcgatccggacacgggcgagatcatcgccaag
gccaatgaagagctgaccgagtccctgctcaagaagctgcgcagcgccggcatccaggat
ctgcagtgcatctacacgaatgagctggaccagggcgcctacatctcgcagaccctgcgc
accgacgaaaccgtggatgagttcgctgcacgcgtggccatctaccgcatgatgcgcccc
ggcgagccgccgaccgaagacgccgtgcaggccctgttccagcgcctgttctacaacccc
gacacctacgacctgtcgcgcgtgggccggatgaagttcaacgccaaggtcggccgcgat
ggcgccaccggccccatggtgctgtccaacgaggacatcctggccgtggtcaagatcctg
gtggatctgcgcaacggcaagggtgaagtcgacgatatcgaccacctgggcaaccgccgc
gtgcgttgcgtgggcgaactggccgaaaaccagtaccgcaccggcctggcacgtatcgag
aaggccgtgaaggagcgtctgggccaggccgagcaagagccgctgatgccccatgacctg
atcaacagcaagccgatttcggccgccctgaaggaattcttcggtgcgtcgcagctgtcg
cagttcatggaccagaccaaccctctggccgaaatcacgcacaagcgtcgcgtctcggcc
ctgggcccgggcggtctgacccgcgagcgtgcaggcttcgaagtgcgcgacgtgcacgtg
acccactacggccgcgtctgccctatcgaaacgcctgaaggcccgaacatcggcctgatc
aactcgctggccctgtacgcccgcctgaacgagtacggcttcatcgagacgccgtaccgc
cgggtggccgacggcaaggtcacgatggagatcgactacctgtcggccatcgaggaaggc
aagtacatcatcgcccaggccaacgccgagctggatgccgaaggccgcctgatcggcgac
ctggtgtcggcgcgcgaaaagggtgattcgaccctggtgtctgccgagcgcgttcagtac
atggacgtgtcgcccgcacagatcgtgtcggtggctgcctcgctgattccgttcctggaa
cacgatgacgcgaaccgcgcattgatgggcgccaacatgtcgcgtcaggccgtgcctgtg
ctgcgtcccgaaaagcccatggtgggcacgggcatcgagcgcgtggcggcagtggactcc
ggcaccgtggtgacggcaacccgcggcggtatcgtggactatgtcgatgcaacgcgcatc
gtggtccgcgtgaacgatgcggaagccgtggccggcgaagtcggcgtggacatctacaac
ctcatcaagtaccagcgttccaaccagaacaccaacatccaccagcgtcccatcgtcaag
cgtggcgacaagctggccaagggtgacgtggtggccgacggcgcatcgaccgacctgggc
gaaatcgccatcggtcagaacatgctgatcgccttcatgccctggaacggctacaacttc
gaggattcgatcctgatcaacgagcgcgtggtggccgaagaccgctacacctcgatccac
atcgaagaactcgtggtgatggcccgcgacaccaagctcggtgccgaggaaatcacgcgc
gacatcccgaacctgtccgagcagcagctcaaccgtctggacgagtccggcatcatctac
gtgggtgcggaagtgcagcccggcgatgtgctggtcggcaaggtcacgcccaagggcgag
accacgctgacgcctgaagagaagctgctgcgcgccatcttcggcgagaaggcttccgac
gtgaaggacacctcgctgcgcgtggaccagggctcgcaaggcaccgtgatcgacgtgcag
gtcttcacccgtgaaggcatccagcgtgacaagcgcgcccagcagatcatcgacgatgaa
ctcaagcgctaccgcctggacctgaacgaccagctgcgcatcgtcgaggccgacgccttc
gaccgtatcgaaaagctgctcaatggccgcgtggccaacggcggcccgcagaagctggcc
aagggcgccaagatcgacaaggcctacctggatggcgtggagaagttccactggttcgac
atccgtcctgcagaggacgaagtcgccacccagctcgagtccatcaagaactcgctggag
cagacgcgccacagcttcgacctggcttttgaagaaaagcgcaagaagctcacccagggc
gacgagctgcccgctggcgtgctcaagatggtcaaggtctacctggccgtcaagcgccgc
ctgcaacccggcgacaagatggccggccgccacggcaacaagggtgtggtttccaagatc
gttccggtcgaggacatgccctacatggccgacggctccactgccgacatcgtgctgaac
ccgctgggcgtgccttcgcgtatgaacatcggccaggtgctggaagtgcatctgggctgg
gccggcaagggcctgggccagcgcatcggcgacatgctgcagcaggaagcccgcgccgcc
gagatccgcaccttcatggaagagatctacaactcgcgcggccgcaaggaagacctgacg
cagctcgacgacaaggagatcgtgtccatggcgcaggcgctgaccacgggcgtgccgttt
gccacgccggtgttcgatggtgcgtccgagcaggaaatccaggacatgctgcatctggca
tatccggaggagctggcccagcgcaaggggctgaccgagtcgcgcacgcaggcctacctg
tatgacggccgcaccggtgaccgcttcgagcgtccgaccaccatcggctacatgcactac
ctgaagctgcaccacttggtcgacgacaagatgcacgcccgctccacgggtccgtactct
ctggtgacgcagcagccgctgggcggcaaggcccagttcggtggccagcgtttcggggaa
atggaagtgtgggcgctggaagcttacggcgccgcctatgtgctgcaggaaatgctgacc
gtgaagtccgacgacgtggtgggccgtaccaaggtgtacgaatccatcgtcaagggcgag
cacgccatcgaggcaggcatgcccgagtcgttcaacgtgctggtcaaggaaatccgctcc
ctgggcctcgacatcgagcttgagcgttcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (22)   

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