KEGG   Desulfatibacillum aliphaticivorans: Dalk_0770
Entry
Dalk_0770         CDS       T00813                                 
Name
(GenBank) excinuclease ABC, B subunit
  KO
K03702  excinuclease ABC subunit B
Organism
dal  Desulfatibacillum aliphaticivorans
Pathway
dal03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Dalk_0770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dal03400]
    Dalk_0770
DNA repair and recombination proteins [BR:dal03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Dalk_0770
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Dalk_0770
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD AAA_30 AAA_22 AAA nSTAND3 UB2H Kinesin SWI2_SNF2 DUF6448 AAA_16 DUF4391 AAA_5 Microtub_bd DUF87
Other DBs
NCBI-ProteinID: ACL02475
UniProt: B8FHQ8
Position
1037361..1039400
AA seq 679 aa
MSAKKAEASAPPNLEEFTEFQVVSPFEPKGDQPAAIEYLAKGVNEGKKHQVLLGVTGSGK
TFTMAHVAARCGKPVLVLAPNKTLAAQLYNEFKQLFPHNAVEYFVSYYDYYQPEAYLPNS
DTYIEKDSKINEMIDKLRHAATVAVLTRRDVIIVASVSCIYGLGAPEDYIAMRLELTVGM
ELSREKLLKDLVAMLYERNDMDFHRGVFRVRGDRVEIYPAYWDDQAIRIEFFGDDVDSIS
EIDPLRGVVMKKLQRTMVYPASHYVTSKETLKRAMGAITEELKVRVAHFRDTNQLIEAQR
IQERTDYDLEMMHELGYCTGIENYARHLTGRNEGEPPPTLIDFFPEDFLMFIDESHMAVP
QVRGMFRGDRSRKETLVQFGFRLPSALDNRPLMFEEFAEKVKQVVYVSATPADYELEVAD
GAIAEQIVRPTGLMDPEIIVRPATNQVDDLLEEIRVRVENNERVLITTLTKRMAEDLCDY
YEGLGLAVRYLHSDIKTMERMEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADK
EGFLRSARSLIQTVGRAARNVNGKVILYADAITRSMKMAMDESQRRRDLQAAYNEANGIT
PESIKKEIGSIFDSVYEADYVTVEADKKEAQEAIESKDLDRLIAMLEKEMQQAAKELAFE
RAAELRDQIKDLKRQDLGI
NT seq 2040 nt   +upstreamnt  +downstreamnt
atgtccgccaaaaaagcggaggcgtccgccccgcccaatctggaggaattcactgaattt
caggtggtctctcctttcgaacccaaaggggatcagcccgcagccatagagtatctggcc
aaaggggttaacgaaggcaaaaagcaccaggtgcttttgggcgtcaccggttcgggcaag
actttcaccatggcccacgtggccgcccgatgcggcaagccagtcctggttttggcgccg
aacaaaacccttgcagctcagctgtacaacgaattcaagcagttattccctcataatgcg
gtggagtatttcgtctcctattacgactactaccagcctgaagcctatttgcccaacagc
gacacctatatagaaaaagactccaagatcaacgaaatgattgacaagctccgccacgcc
gccaccgtggccgtgctcacccggcgggacgtgatcatcgtggccagcgtgtcgtgcatc
tacggtctgggcgcgccggaagattacatcgccatgcgcctggagctcaccgtgggcatg
gagctttcccgggaaaagctgctcaaggatctggtggccatgctctatgaacgcaacgac
atggattttcaccggggcgtttttagagtgcgcggggatcgggtggaaatctaccccgcc
tactgggacgatcaagccatccgcatcgagttcttcggggacgacgtcgactccatctcg
gagatcgacccgctccgcggcgttgtgatgaaaaaactgcagcgtaccatggtctacccg
gccagccattacgttacgtccaaggaaaccttaaagcgcgccatgggcgccatcacggaa
gagttgaaggtgcgggtggcccactttcgggatacaaaccagttgatcgaagctcagcgc
atccaggagcgcacggactacgatctggagatgatgcacgagctgggctattgcacgggc
attgaaaactacgcccgccatctgaccggcaggaacgaaggcgagccgccgcctacgctc
atcgacttttttcctgaagactttcttatgttcattgacgaaagccacatggctgtgccc
caggtgcggggaatgttccggggggaccggtcccgcaaggaaactctggtccagttcgga
tttcgcctgccgtcggctttggacaaccgcccgcttatgtttgaggaattcgccgaaaag
gtgaaacaagtggtgtacgtttccgccacaccggccgattatgaactggaagtggccgac
ggcgccattgctgagcagatcgtccggcccacgggccttatggatccggaaatcatcgtc
cggcccgcaaccaatcaggtggacgaccttttggaggaaatccgcgttcgggtggagaat
aacgaaagggtgctgataaccaccctgaccaagcgcatggccgaagacctttgcgactac
tacgaaggcctgggcttggccgtgcggtatcttcactccgatatcaaaaccatggagcgc
atggaaatcatccgggatctccgcctgggcgaattcgacgtgctggtgggcatcaacctt
ttgcgtgagggcctggacatcccggaagtttccctggtggctattctggacgcggacaag
gagggttttctccggtccgcacgctccctcattcagactgtaggccgcgccgcccgtaac
gtgaatggcaaggtcatcctttacgccgacgccatcacccgctccatgaaaatggccatg
gacgaaagccagcgccgcagggaccttcaggccgcctacaacgaggcaaacggcattacg
cccgaaagcatcaaaaaggagatcggctccattttcgattccgtgtacgaggccgattac
gtcaccgtggaagcggacaaaaaggaagcccaggaagccatcgaaagcaaagacctggac
cgcctcatcgccatgctggaaaaggaaatgcagcaagccgccaaggagcttgcctttgag
cgcgccgccgaactccgcgaccagattaaggacctcaaacgccaggatttggggatttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (34)   

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