KEGG T05038: SAMEA4475696

Dermatophilus congolensis: SAMEA4475696_1273

Entry

SAMEA4475696_1273 CDS       T05038

Symbol

rsmB

Name

(GenBank) Ribosomal RNA small subunit methyltransferase B

K03500

16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]

Organism

dco Dermatophilus congolensis

Brite

KEGG Orthology (KO) [BR:dco00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:dco03009]
    SAMEA4475696_1273 (rsmB)
Enzymes [BR:dco01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.176  16S rRNA (cytosine967-C5)-methyltransferase
     SAMEA4475696_1273 (rsmB)
Ribosome biogenesis [BR:dco03009]
Prokaryotic type
  rRNA modification factors
   16S rRNA modification factors
    SAMEA4475696_1273 (rsmB)

SSDB

Motif

Pfam:

Methyltr_RsmB-F NusB DUF6306 Fe-ADH AAA_16

Other DBs

NCBI-ProteinID:

SNV21557

UniProt:

A0A239VHB0

Position

1:1448659..1450242

AA seq 527 aa
MSDARGQGKNAGRGFEGQGRVRYGGRARVSDASRRSAQRPSQRSRHGDKARSVAFQAMRA
IEEGAYANLDLPARLRRATLHRQDYAFVTELVYGTTRMRGFYDAVISVAGNRRVEDVDAD
VLAALRLGVHQILDMRVPVHAAVDETVALVRGEVGVGASKFANAVLRRVSERSREQWCER
VVEGVDDEAERLAVLYSHPAWVVRALRAALVAHGSVPGADAGDEAGGREAVRQALVELLE
ADNAGAKVALVARPGLADVQELVEAGAKPLSLSAYSVVLDGGDPGRIAAVRSGRAAVQDP
GSVLLPPALVGVPVEPVAGGDGERWLDMCAGPGGKAGLLAALSIGYPGDVAVFANEVSEH
RAELVEQAVSAAQDAGAEVFVGVGDGRSLGAEEPGGFDRVLVDAPCTGLGALRRRPEARW
RRVPRDVAELAQLQGQLLDSAIAATRVGGVVAYVTCSPHPVETVDVVQGALERNAHVSVL
DAQQWVRGADGEQVQGLGAAPYVQLWPHVHGTDAMFLALLRVGDAAG

NT seq 1584 nt +upstreamnt +downstreamnt
atgagcgatgcgcgtggtcagggcaagaacgcaggccggggctttgaaggtcaagggcga
gtgaggtacggggggcgcgcccgggtcagtgatgcctcgcggcgttctgcgcaacgccct
tcgcaacggtctcgtcatggcgataaagcacgttcggtggctttccaggcgatgcgcgcc
atcgaagaaggggcgtacgccaacctggaccttccggcacggctacgtcgagcaacgctg
catcggcaggactacgcattcgtcacggagcttgtctacggaactacgcggatgcgggga
ttttatgacgcggtgatcagcgtggcggggaatcgtcgcgttgaagacgtggacgcggat
gtgttggctgcgctgcgtttgggagtgcatcagattcttgacatgcgtgtcccggtgcat
gcggcagtcgatgagacggttgcgctggtgcgtggcgaggtcggtgtgggagcgagcaag
ttcgctaatgcggtgctgcggcgagtcagtgagcgctcgcgggaacagtggtgtgagcgt
gttgttgagggggtggatgatgaggctgagcggttagcggtgttgtattcgcatccggcg
tgggtggtgcgtgcgctgcgggctgcgctggttgctcatggaagtgtccctggcgcggat
gctggggatgaggcaggtggccgggaggctgttcggcaggcgttggtggagctgctggag
gctgataatgctggggcgaaggtggctttggtggcgcgtcctggtttggctgatgtgcag
gagttggtggaggccggggccaagccgttgtcgttgtctgcgtattcggttgttcttgat
ggtggtgaccctggccgtatcgcggcggtgcgttctgggcgtgcggcggtgcaagatcct
gggtcggtgttgctacctccggcgttggtgggggtgccggtggagccagttgccggtggt
gatggtgagcgctggttggatatgtgtgctggtcctggcggtaaggcgggcttgttggct
gcgttatcgattgggtatccgggtgatgtggcggtgttcgctaatgaggtgagtgagcat
cgagctgagttggtggagcaggcggtctcggcggcgcaggatgctggtgctgaggtgttt
gttggtgttggtgatgggcgttctttgggcgcggaggagcctggcgggtttgatcgggtg
ttggtggatgccccgtgtacggggttgggtgcgttgcggcgccgtccggaggcgcggtgg
cggcgtgttccgcgggatgtggcggagttggcgcagctgcaggggcagttgttagattcg
gcgattgctgccacgcgcgtggggggtgtggtggcatatgtgacgtgtagtccgcatccg
gtggagacggtggatgtggtgcagggtgcgttggagcggaatgcgcatgtgtctgtgttg
gacgctcagcagtgggtgcgtggcgctgatggtgagcaagttcaggggttgggagcggcg
ccgtatgtgcagttgtggccgcatgtgcatggtacggatgcaatgtttttggcgttgctg
cgggtgggggatgctgctgggtga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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