KEGG   Dendrobium catenatum: 110095491
Entry
110095491         CDS       T05027                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
dct  Dendrobium catenatum
Pathway
dct03013  Nucleocytoplasmic transport
dct03015  mRNA surveillance pathway
dct03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dct00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110095491
  09122 Translation
   03013 Nucleocytoplasmic transport
    110095491
   03015 mRNA surveillance pathway
    110095491
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dct03019]
    110095491
   03041 Spliceosome [BR:dct03041]
    110095491
Enzymes [BR:dct01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     110095491
Messenger RNA biogenesis [BR:dct03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     110095491
Spliceosome [BR:dct03041]
 Complex C
  Other components
   EJC/TREX
    110095491
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110095491
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 YihI
Other DBs
NCBI-GeneID: 110095491
NCBI-ProteinID: XP_020676708
Position
Unknown
AA seq 428 aa
MGDARDNDAYEEELLDYEEDEEKAPDSVGMKAGGETAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVHIVKHKDILKNECPHVVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPEQI
DTSTYMPS
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgggtgatgcaagggataacgacgcctacgaagaggagcttcttgactatgaggaagac
gaagagaaggccccagactccgttgggatgaaggctggtggtgaaacggcaaagaagggt
tatgttggaattcacagctccggatttagagactttttgttaaagccagaacttctacgt
gctatagttgattctggatttgagcacccttcagaagtacaacatgagtgcatcccacaa
gccattctgggaatggatgtcatctgccaagcgaagtctggaatggggaaaactgctgtt
tttgttctgtcaacgcttcagcaaattgagccaattgctggtcaagttgcagcacttgtc
ttgtgtcacactagagaactggcgtaccagatatgtcatgagttcgagagatttagcact
tatttgcctgatatcaaagttgcagtattctatggaggcgttcacatagtaaagcacaag
gatattcttaaaaatgaatgtcctcatgtagttgttggcacaccaggaagaattctagca
ctagctagagacaaagacctctctttgaagaatgtgagacatttcattcttgatgaatgt
gacaagatgctagagtcccttgacatgcgaagagatgtgcaggagatcttcaaaatgact
ccacatgataagcaagttatgatgttttccgccacactcagcaaggaaatacgccctgtt
tgcaagaaattcatgcaagatccaatggaaatatatgtagatgatgaagcaaaactgacc
ctgcatggtctagttcagcactacatcaaactgagcgagttagagaagaatcgcaaactg
aatgatcttctggatgctttggacttcaaccaggttgtaatttttgttaaaagcgtaaac
agagcagcggagctgaacaagttgctagttgagtgcaacttcccttcaatctgcattcat
tctggcatgtcacaggaagaaaggttgacaaggtacaagggcttcaaggaaggacataaa
aggattcttgtagcaaccgatcttgttggcaggggaattgatattgagcgtgttaacatt
gtgattaattatgacatgccagattctgctgacacttacttgcacagggttggtagagct
ggtagatttggcaccaaggggttggctataacctttgtctcatcagcatctgattcagat
gttcttaatcaggtccaagctagatttgaggtagacattaaggagttgcctgaacaaatt
gatacgtccacatacatgccgtcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (56)   

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