KEGG   Dendrobium catenatum: 110102592
Entry
110102592         CDS       T05027                                 
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE isoform X1
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
dct  Dendrobium catenatum
Pathway
dct03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:dct00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110102592
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dct03036]
    110102592
Chromosome and associated proteins [BR:dct03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    110102592
  Chromatin remodeling factors
   NuRD complex
    110102592
SSDB
Motif
Pfam: SNF2-rel_dom CHDII_SANT-like Chromo Helicase_C DUF1087 ResIII HDA2-3 PHD CHDCT2 PHD_2 DEAD SWI2_SNF2 CUPID C1_1
Other DBs
NCBI-GeneID: 110102592
NCBI-ProteinID: XP_020686637
Position
Unknown
AA seq 1437 aa
MSSLVERLRIRSDKRPLYSDGGSDDDDFILSKRKSASKPEEKPAERIDRDDAKEDACQSC
GEGGSLLCCRTCTYSFHQKCLIYPIKASATDSWTCPECVSPLNEIDKILDCETRATAVDD
VNVSHSGSKKAGVKHYLVKWKGLSYLHSTWVPEEEFKKACKVNPRLRTRLNTFQKQMNSM
NGADDDWIAIRPEWTTVDRIIATRKIGDEREYFVKWRELPYDECSWEVKSDISTFQPQIE
RFNMIQSRGSKKFRSKNKNLIRDSKDPKIKEKELQPFEEKKVFRHIEKKIEFQQFEKSPE
FISGGTLHPYQLEGLNFLRYSWFKSTHVILADEMGLGKTIQSIAFLASLFEDNISPHLVI
APLSTLRNWEREFLTWAPQMNVVMYFGSAQARTVIRNYEFFLPKGKTKKHRKKKSFKDVK
PKRQAKRTMFDVLLTSYEMINMDSASLKSINWQCMIVDEGHRLKNKESKLFLQLKLFNAK
HRVLLTGTPLQNNLDELFMLMHFLDDGKFPSIEDFQKEFKDINQEEQIARLHKLLAPHLL
RRVKKDVMKDLPPKKELILRVDLSSKQKEYYKAILTRNYQILARRGGPQISLINVVMELR
KLCCHVFMLEGVEPETEPLNANEGLKQLLDSSGKMQLLDKMMTKLKEQGHRVLIYSQFQH
MLDLLEDYMTYKKWIYERIDGRIGGAERQIRIDRFNAKSSTRFCFLLSTRAGGLGINLAT
ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLVTRGTIEEKMMQMTKKKMILEHL
VVGRLKTQTVNQEELDDIIRYGSKDLFADESDGPGNTRQIHYDDGAIDRLLNRDEIDAED
ASVDDEDDDLLKAFKVANFKYIDEVEAAAAREEEAKRQSMAENGFTSNPDRANYWEELLR
DRYEVIQIEESTTMGKGKRNRKQMPATEEDEPAETGSDDDDYSFEEELSDTDVGLPGQTS
GRRGQLSRKRCRGNLFPTCLYYLLYQRYHLRSIVYKLKATFAVDLAEPHALMEGEGRSFR
VRGFNQNQRAAFLQLLMRFGFGKFDWKEFVPRLKGKSMQEVHDYGRLFMEHLTEELNDSP
TFSDGVPKEGLRVDEVLVRLGTIQSIEEKLSFLSENPGTPLFAEGIQSWFPGLKGRIWRE
EHDSLLLKAILKHGYARWQYIVEDKDFGLAEIVRQELNLPVINGPFTGAGNQVIDSSKTG
NSVNGSSEAPKANQSNLDYSMLYQFREVQRRIVDFIRKRYHLLDKAINAELLREKNGGAK
FSETTHDSDIDPKATEILSSEPAEPSTLSKELPIMEPIDLQESACDDNSGRLEMIRLYNG
MCGVIESNTPDALHAYFGNSSAASNLSKNLQQLEIIYEDVHRILTVSTQNSAMESSDVKL
AEGSEHQSESKLGRTSETENIHAEVKVANTSVCEESTNSQASDKKKAGDIGDESSNS
NT seq 4314 nt   +upstreamnt  +downstreamnt
atgagtagcttggtggagagacttcgaatacggtcagataagaggcctctctacagtgac
ggaggatcagacgatgatgatttcattctttcgaagaggaaatctgcgtctaagccggag
gagaagcccgcggagcggatagatagagacgacgcgaaagaagatgcatgccaatcatgt
ggagaaggtggaagccttctttgttgtagaacttgtacttattctttccatcaaaagtgc
ttaatttatcccatcaaagcgtctgccactgatagctggacctgtcctgaatgtgtgagc
cccctcaatgagattgataagattttagactgtgaaacacgagcaactgcagtagatgac
gttaatgtttcacattctgggtccaaaaaggctggcgttaagcattacttagtaaagtgg
aagggattgtcctatcttcacagcacttgggtgccagaggaggagtttaaaaaagcttgc
aaagtcaatccacgattgagaacccggttaaatactttccagaaacaaatgaattcaatg
aatggtgctgatgatgattggattgctattcgccctgaatggacaactgtcgacagaatc
attgcaacaagaaaaattggtgatgaacgagaatatttcgtgaaatggagagaacttcct
tatgatgaatgttcatgggaagttaaatcagatatttctaccttccaacctcaaattgaa
aggttcaatatgatccaatctagaggtagtaaaaaatttcgtagcaagaacaaaaatctc
attcgtgattcaaaagatcctaaaattaaggagaaagagttgcaaccatttgaggaaaag
aaagtgtttcggcatattgagaaaaagatagagttccagcagtttgagaaaagtccagaa
tttatttctggagggacattgcatccgtatcagcttgaaggtttaaatttcctgcgctat
tcctggtttaaaagcactcatgtgatccttgcagatgagatgggccttggaaaaactata
cagagtattgcatttcttgcttctctttttgaggacaatatttctcctcatttagtgata
gcaccactttcaacactgcggaactgggagcgtgagtttttaacgtgggctccacaaatg
aatgttgtaatgtactttggatcagcccaagctcgtactgtcataagaaattatgaattt
ttcttacccaaagggaaaactaaaaagcacaggaagaagaagtctttcaaagatgtgaaa
ccaaagaggcaagcaaaaagaacaatgtttgatgttcttttaacatcatatgaaatgatc
aacatggattcagcatctctgaaatctattaactggcagtgcatgattgttgatgaaggt
catcgtcttaagaacaaagagtccaaattgtttcttcaactaaaactttttaatgcaaag
catcgtgtgcttttaactggaacacctcttcagaataacttggatgagcttttcatgctg
atgcactttcttgatgatggaaagtttccaagtattgaagattttcagaaggaattcaaa
gatattaatcaggaggagcaaattgcaaggcttcataagttgcttgcgccacacctcctt
agaagagtaaagaaagatgttatgaaggacctgccaccaaaaaaagagctcattttacgt
gtggatttaagcagtaaacagaaggaatattacaaagccatccttactcggaattaccag
attcttgcacgtcgtggtggtccacagatatcccttattaatgttgtcatggaactccgc
aagctctgttgtcatgtattcatgctagagggggtggaacctgaaactgagccattgaat
gctaatgaaggtttaaagcaacttttggattcgtctgggaagatgcaattactggataaa
atgatgacgaagctcaaagagcagggacacagggttcttatatattcacagtttcagcat
atgctggatttgctggaggactacatgacttataagaaatggatttatgaacggattgat
ggaaggattggtggagctgaaaggcagatacgcattgacagattcaatgctaaaagttca
acgagattttgttttcttctttctactagagctggtggactgggtattaatcttgcaacg
gctgatactgttattatttatgatagtgattggaatcctcatgctgatttgcaagcaatg
gctagagcacatcgtttggggcaaactaataaggtaatgatataccggcttgtcactcgt
gggaccattgaagaaaagatgatgcaaatgacaaagaaaaagatgattttagaacatctt
gttgttggtcgactcaagacacaaactgttaatcaagaagagttagatgacatcataaga
tatgggtcaaaggatctttttgctgatgagagtgatggaccagggaatactcgccaaatt
cattatgatgatggtgcaattgacaggctacttaatcgcgatgaaattgatgcggaagat
gcttcagttgatgatgaagatgatgacttgctaaaagccttcaaggtggcaaacttcaaa
tacatagatgaagttgaagctgctgcggcaagggaggaggaagctaaaaggcagtctatg
gctgaaaacggttttacctccaatcctgatagggccaattactgggaagaactacttagg
gacagatatgaagtgatccagattgaagagtctactactatgggcaagggaaagcgaaat
cggaaacagatgcctgctactgaagaggatgaaccagctgaaacaggctctgacgatgat
gactattcctttgaggaagaattgtcagacacggacgttggtctacctggacaaacatca
ggaaggagggggcaactctcaagaaaaagatgtcgaggtaatttatttcctacatgctta
tattatttattgtaccaaaggtatcatttaagaagcattgtttacaaattgaaagctaca
tttgcagttgatttagctgaaccacatgccctaatggaaggtgaaggaaggtctttcaga
gttcgtggttttaatcaaaaccaaagggctgcatttttgcaattgcttatgaggtttggt
tttgggaaatttgattggaaggagttcgtgcctcgactaaagggaaaaagcatgcaagaa
gttcatgattatggccgactatttatggagcatcttactgaagagttaaatgattcgccc
actttttcagatggagtaccaaaagaaggtttacgggtagatgaagtactggttagactc
ggcaccattcaatccatagaagagaagttgagctttctctcagaaaatcctgggactccc
ctttttgcagaaggcatacagtcatggtttcctggtttgaaaggaagaatatggagggaa
gaacatgatagtttgttgttgaaagctatcctaaagcatggctacgctagatggcaatat
attgttgaggataaagattttgggcttgcggagattgttcgtcaagagttgaaccttcct
gtgattaatggaccttttactggtgcgggtaaccaagtaattgacagttcaaagacagga
aactcggtaaatggttcttcagaagctcccaaggcaaaccaatcaaatctggattattct
atgctttatcaatttagggaagtacaaagaaggattgtggacttcatacgaaaaagatat
catcttttggataaggctataaatgcagagctactgagagaaaaaaatggtggagctaaa
ttttctgagactactcatgattctgatattgaccctaaggctactgaaattctcagctca
gaacctgcggagccaagcactttatctaaagaattgcctattatggaacccattgatctg
caggaatctgcttgtgatgataatagcggtcgcctcgagatgattagactttacaatgga
atgtgcggggtaatagaatccaacaccccggatgctctccatgcgtattttggcaacagt
tctgctgcttcaaatttaagcaaaaatctccaacagcttgaaattatatatgaagatgtg
catcgaattcttactgtatccactcaaaactctgccatggaaagctcagatgttaagttg
gcagagggcagtgagcatcagagcgaatccaaactcggaagaacttcagagacagaaaat
attcatgccgaagttaaggtggcgaacacttctgtttgtgaagagagcaccaactctcaa
gcttcagataaaaagaaagctggtgatataggagatgaatcgagcaacagttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (14)   
   Pfam (14)   
All databases (62)   

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