KEGG   Musicola paradisiaca: Dd703_0242
Entry
Dd703_0242        CDS       T00927                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
dda  Musicola paradisiaca
Pathway
dda03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dda00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dd703_0242
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dda03019]
    Dd703_0242
   03400 DNA repair and recombination proteins [BR:dda03400]
    Dd703_0242
Enzymes [BR:dda01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Dd703_0242
Messenger RNA biogenesis [BR:dda03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Dd703_0242
DNA repair and recombination proteins [BR:dda03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Dd703_0242
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind ResIII Helicase_Sgs1 zf-CXXC
Other DBs
NCBI-ProteinID: ACS84059
UniProt: C6C7E1
Position
273050..274873
AA seq 607 aa
MSTADVLNREALAAQILRETFGYQQFRPGQQAIIHAAVSGRDCLVIMPTGGGKSLCYQIP
ALVLDGLTLVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQMAVIAGCRSGQIRLLY
IAPERLTNEGFLEQFTGWNPSLIAIDEAHCISQWGHDFRPEYRELGYIKQRFPQLPVVAL
TATADETTRNDIIRLLGLRDPLVQISSFDRPNIRYTLVEKFKPLDQLWLFVQGQRGKSGI
IYCNSRAKVEDISARLQNRGLSVGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLAAEAALFYDPADMAWLRRCLEEKPASAQ
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGENRQQPCGNCDICLDPPKRYDGLVDAQKAL
SCVYRAGQRFGMGYIAEVLRGANNQRIREFGHDKLPVYGIGKDKTQEQWISILRQLIHLG
LLTQNIIQHSALQLTESARPVLRGEVPLQLAVPRTINLKPRASQKSYGGNYDRKLFAKLR
KLRKSIADEDNIPPYVVFSDATLLEMAEVMPVTPGELLNINGVGQRKLERFGVPFMTLIR
EHLDNDE
NT seq 1824 nt   +upstreamnt  +downstreamnt
gtgtctacggcagacgtgttgaatcgggaagcgttagcggcgcaaatattgcgtgaaacc
ttcggttatcagcaatttaggccggggcaacaggcgattatccatgccgccgtcagcgga
cgggactgcctggtgattatgcctaccggcggcggtaaatcgctgtgttatcagatcccc
gccctggtattggatgggcttacgttggtggtgtcgccgctgatttccctgatgaaagac
caggtggatcagctacaagcctacggcgtttcggccgcttgtcttaattccactcagacc
agagaacagcagatggcggtgatcgccggttgccgcagcgggcagattcgcctgctgtat
atcgcaccggagcgcctgaccaacgagggttttcttgagcaattcaccggctggaatccg
tcgttgatcgccattgatgaagcgcactgtatctcccagtgggggcatgattttcgtccg
gaataccgggagctcggttatatcaagcagcgtttcccacagttaccggtggtagcgctg
accgccactgccgacgaaaccacccgcaacgacatcatccgtttgctgggtttgcgtgat
ccgctggttcagatcagcagcttcgaccgtcccaatatccgctatacgctggtggagaaa
ttcaaaccgctcgaccagctgtggctgttcgttcaagggcagcgcggcaaaagcggcatc
atttactgcaacagccgggcaaaagtggaagatatcagcgcccgtctgcagaaccgtggc
ctgagcgtaggggcttatcacgccgggctggataacgaacggcgcgcgcaagtacaggaa
gcatttctgcgtgatgacctgcaggtggtggtggcgaccgtggcgttcggcatgggcatc
aacaaacccaatgtccgctttgtggtgcatttcgatattccgcgcactatcgagtcttac
tatcaggaaaccggtcgcgccggaagggacgggctcgctgccgaagcggcgctgttttac
gacccggcggatatggcgtggctgcgccgctgtctggaagagaaaccggcaagcgcgcag
ctggacattgagcgtcacaaactgaacgccatgggcgcgtttgccgaagcgcagacctgc
cgccgtctggtattactgaattatttcggtgaaaaccgccagcaaccttgcggcaactgc
gatatctgtctggatccgcccaagcgttacgatggcctggtggatgcgcaaaaagcgctg
tcatgcgtgtaccgcgcggggcaacggttcggcatgggatatatcgccgaagtgctgcgt
ggcgccaataatcagcgtatccgggagtttggtcacgataaattgccggtttacggtatc
ggtaaagacaaaacgcaggagcagtggatcagcattttgcgccagctgatccacctgggg
ttgctgactcagaatatcatccagcactccgccctgcagttgacggagtcggcccggccg
gtgctgcgtggtgaagtgccgctgcaattggcggtgccgcgtaccatcaacctcaagccg
cgcgccagccagaaatcctacggcgggaactacgaccgtaagctgttcgccaagctgcgt
aagctgcgcaagtcgatcgccgacgaagacaatattccgccttatgtcgtgttcagcgac
gccacgctgctggagatggcggaggtgatgccggtgacaccgggtgaattgttgaatatc
aacggggtggggcagcgtaagctggagcgttttggcgtaccctttatgacactgattcgc
gaacatctcgataacgacgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (25)   

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