KEGG   Dictyostelium discoideum (cellular slime mold): DDB_G0270148
Entry
DDB_G0270148      CDS       T00245                                 
Symbol
cpsf4
Name
(RefSeq) CCCH-type zinc finger-containing protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
ddi  Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ddi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    DDB_G0270148 (cpsf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ddi03021]
    DDB_G0270148 (cpsf4)
   03019 Messenger RNA biogenesis [BR:ddi03019]
    DDB_G0270148 (cpsf4)
Transcription machinery [BR:ddi03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     DDB_G0270148 (cpsf4)
Messenger RNA biogenesis [BR:ddi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     DDB_G0270148 (cpsf4)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCCH_3 zf-CCHC zf-CCCH_4 zf-CCHC_3 zf-CCHC_2 zf-CCHC_4
Other DBs
NCBI-GeneID: 8617548
NCBI-ProteinID: XP_646578
dictyBase: DDB_G0270148
UniProt: Q55CA3
Position
1:4311820..4313408
AA seq 372 aa
MSELEVDILSLSLTFDFEAYFTDKTDGDGDDKDGSDICRFFLKGSCTKGSDCPYKHTKAE
RAVVCKHWLRGLCKKGELCEFLHEYDLQKMPECYFFSKHGECNNQECMYLHVNPEEKVRE
CPWYSRGFCKHGPKCRHKHIKKLLCENYYLGFCPEGPKCKYGHPKYELPKEEPEKKVNIQ
EQFEMEQQQQQQQQQQQFHHHQQQNQQFNGMGGNNNNNEFRPKQQFQQNQPFNKGGPMEN
GFNPNKPIICHKCGTPGHKSNACPNSEQFKQGNGPPGQQSYGGGGGGFKPQFNNGGNPPN
LESVICKKCQQTGHYANKCPNKKVGGYQGFNNQNQPPQGGQQNMYYQQQPPQGGQPPPHY
YQQQQQQQQQQY
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgtcagaattggaagttgatatattatcattatctttgacatttgatttcgaagcatac
tttacagataaaacagatggtgatggggatgataaagatggatcagacatttgtaggttt
tttttaaaaggttcatgcaccaaaggttctgattgtccatataaacatacaaaagcagaa
agagcagtagtttgtaaacattggttaagaggtctttgtaaaaaaggtgaactatgtgaa
tttttacacgaatatgatttacaaaaaatgcctgaatgttatttcttttcaaaacatggt
gaatgtaataatcaagaatgtatgtatttacatgttaatcctgaagaaaaggttagagaa
tgtccatggtatagtcgtggattttgtaaacatggtccaaaatgtagacataaacatata
aagaaattattatgtgaaaattattatttaggtttttgcccagaaggcccgaaatgtaaa
tatggtcatcctaaatatgaattaccaaaagaagaaccagagaaaaaagttaatatacag
gaacaatttgaaatggaacagcaacagcaacaacagcaacaacaacaacaatttcatcat
catcaacaacaaaatcaacaatttaacggaatgggtggaaataataataataatgaattt
agacctaaacaacaatttcaacaaaaccaaccatttaataaaggtggaccaatggaaaat
ggattcaatcctaataaaccaattatttgtcataaatgtggaacacctggtcataaatcg
aatgcatgtccaaattctgaacaatttaaacaaggtaatggaccaccaggccaacaatct
tatggtggcggcggtggaggttttaaacctcaatttaataatggcggtaaccctccaaat
ttagaatctgtaatttgtaaaaaatgtcaacaaactggtcactatgcaaacaaatgtccg
aataaaaaagtgggtggataccaaggttttaataatcagaatcaaccacctcaaggtggt
caacaaaatatgtattatcaacaacaaccacctcaaggtggtcaacctccccctcattat
tatcaacaacaacaacaacaacaacaacaacaatattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (120)   
   KEGG ORTHOLOGY (1)   
   RefGene (115)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   DICTYBASE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (138)   

Download RDF
DBGET integrated database retrieval system