KEGG   Dictyostelium discoideum (cellular slime mold): DDB_G0275005
Entry
DDB_G0275005      CDS       T00245                                 
Name
(RefSeq) RING zinc finger-containing protein
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
ddi  Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ddi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DDB_G0275005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ddi03000]
    DDB_G0275005
   03019 Messenger RNA biogenesis [BR:ddi03019]
    DDB_G0275005
   04121 Ubiquitin system [BR:ddi04121]
    DDB_G0275005
Enzymes [BR:ddi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     DDB_G0275005
Transcription factors [BR:ddi03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    DDB_G0275005
Messenger RNA biogenesis [BR:ddi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     DDB_G0275005
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     DDB_G0275005
Ubiquitin system [BR:ddi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    DDB_G0275005
SSDB
Motif
Pfam: zf-RING_4 RRM_1 zf-RING_2 zf-C3HC4_3 Rtf2 zf-C3HC4 zf-C3HC4_2 Prok-RING_4 zf-UDP Nup35_RRM_2 Torus zf-RING_5
Other DBs
NCBI-GeneID: 8619741
NCBI-ProteinID: XP_644313
dictyBase: DDB_G0275005
UniProt: Q554L0
Position
2:4898014..4903137
AA seq 1486 aa
MSDEDNSCPLCLDELSKADRKFRPCPCGYQICVFCFERIRESEQNRCPACRKTYDSVNFS
VISSDEEEEEDEDDEEDDSEDDGQDRRRNRKYNGVNSLNNSLDYTKRGDKPLNTVRVIQR
NLVYVTNLAISIAKPEILKKNEYFAQYGKILKIVINRNNIYNLNSPHGACVSAYITYARK
EDALVAIQTIDGATIEGRVLRASFGTTKYCSYFLRKLPCNNPDCMYLHELGQEDDSYTKE
DITSTAVYKPKPTQQPTPWKESSEKVLASPSLSSSTSSTNNMSNSSSFKTWNISNVSPQP
VTVLNPLEWPSATDASSMAPAILPSGSSPPLSKSQERPFLPATASWGQNIINQKPKSYHE
DFPDVGFEIKTKKSNSLKKSGTNNTTLTSSNDSSSLLSSSSSNNNNTTTNTTTITTKIQE
TASILRQKQLEEEQFKKDKERLEKEKQESYRLEKERLENERLEKEKHQLQMEKERLEREK
ERLEKEKMEKEKRLERERQERDRLEKERQERDRLEKERIEREKQEKIKQEKQAKQQAKKQ
QQKQKSSSKQTTPTNTTPNITSTTPPTNNNNTIATTTNTTNTTTNTTATTPLTTSSSSNN
ATTLSTPLTTSTTLDLLNERFNTININEIEPIANWEGLIPDDQQTDFNDWYNPTNFSSST
AAASSTTTASNTNPTATTTTTTTTTSSSSPPQPQLQPSSPLSEDKNKSPPTQPLEELVIA
ETISTINTVTAPTPTPTPTQTTNSASSPPPSSSSTSSPTSTANLSTNPPEKRSRSRFEFA
KDSSRNSVDTTGSLSSSTNNTASLITPDMFFSIQSEQYQLPTLSSLHHPNGVEPTLNSQS
IIENSLNLNLVGNRSLNNSQNNINNQTNSLNNSGSNNLIFNNDYNNNNNNNNNNNSFSNN
IENEDSSQQFFRSLFPSVNIRFSFPNQQVSQPSLNGNNSNNNININNNNTNNNNSNNNNN
NNNNNNNNNNNNNNNNNNNNNSSINMNDFPPLESSGSSIKTFQDPAIVNSYKSNGDGNSV
WKVIPNNNPLNNSNSNIYGNNNNNNNSNGNLNLRKSVTSSVSPPPGFGGFDSQKPMVNPP
PGFAPTPPPPGFQNIIPPPGFQSNNNTTTTNNNNSTNNNNNNNNGNSLNNSSSTINGNQL
LSMVNNGLMSGPTPFVDPSNLFDSQYDNDMLAMENIKNKDKKKNKEEQEQEQLQLQHQLH
QQQMLQQLHQQQQQQLNNNNNNNNNNNNNNNNNNNNNNNNNNDYQIQMQLLQQQQQLQQL
QMRLQQQQQQQQQHFQSQPQQQQQQQQQILHLQQLLQQQQQQQQQQQQQQQQQQQQQQQQ
PSKDNLFLPQFNGMSNSPQQQQNNIFNMNSFYQQQQQQQAQKQNNSPFPYGFQQPPIIPN
GNLRPPGMTQLGYQQIPPGMHNNNNNNPNNNSNSSNNNNNSNFIDFLRQSGITMNDDVNS
SGMMTPSSLLNDSSLEHRVASTNKELKDLEDKLQKSSPLNTQSYYR
NT seq 4461 nt   +upstreamnt  +downstreamnt
atgtcagacgaagacaattcatgtccactctgcttggatgaattatctaaagcagataga
aaatttaggccatgtccatgtggttatcaaatatgtgttttttgttttgaacgtattaga
gaaagtgaacaaaatagatgtcccgcgtgtagaaaaacatatgattctgttaatttttca
gttatatcatcagatgaagaagaagaagaggatgaagacgatgaggaagatgacagtgaa
gacgatggacaagatagaagaagaaatagaaaatataatggtgtaaattcattaaataat
agtttggattatactaaaagaggtgataaacctttaaatacagttagagtaattcaaaga
aatttagtttatgttacaaatttagcaatatccatcgctaaaccagagattttaaaaaag
aatgaatactttgcacaatatggaaagattttaaagattgtgattaacagaaataatatt
tataatttgaattcacctcatggagcatgtgtaagtgcttatattacatatgcaagaaaa
gaggatgcattggttgcaatccaaactattgatggtgcaaccattgaaggtagagtttta
cgtgcctcttttggtacaactaaatattgctcttactttcttagaaaacttccatgtaat
aacccagattgtatgtatcttcatgaattgggtcaagaagatgatagttatacaaaagaa
gatattacttcaactgctgtttataaaccaaaaccaacccaacaaccaactccatggaaa
gaatcaagtgaaaaagttttagcatcaccatcattatcttcatcaacatcttcaacaaat
aatatgtcaaattcatcatcatttaaaacatggaatatttcaaatgttagtccacaacca
gttacagtattgaatccattagaatggccatcagctaccgatgcttcaagtatggcacca
gcaatattaccatcaggatcatcaccaccattatcaaaatcacaagaaagaccattttta
ccagctacagcatcatggggtcaaaatataataaatcaaaaaccaaagagttatcatgaa
gattttccagatgttggatttgaaattaaaactaaaaagagtaattctcttaaaaaatca
ggaactaataatactactttgacatcaagtaatgatagtagttcactattatcttcatca
tcttcaaacaataataatactaccaccaacaccaccacaattactactaaaattcaagaa
acagcatcaattctaagacaaaaacaattggaagaagagcaatttaagaaagataaagaa
cgtttagaaaaagagaaacaggaaagctatcgtttagaaaaagaaagattagagaatgaa
cgtttagagaaagagaaacatcaattacaaatggagaaagagcgtttagagagagaaaaa
gaacgtttagaaaaggagaagatggagaaagagaaacgtttggagagagaaagacaagaa
agagatcgtttggagaaagaaagacaagaaagagatcgtttagagaaagaaagaatagaa
agagagaaacaagagaaaattaaacaagaaaaacaagccaaacaacaagcgaaaaaacaa
caacaaaaacaaaaatcttcaagtaaacaaacaactccaacaaatacaactccaaatata
acttcaacaactccaccaactaataataataatactatagctactactactaacaccacc
aacactaccaccaatactactgctactacaccattaacaacatcatcatcatcaaataat
gctactaccctctcaacaccattaactacatcaacaactttagatttactcaatgaaaga
ttcaatactataaatataaatgaaattgaaccaatagcaaattgggaaggtttaattcca
gatgatcaacaaacagattttaatgattggtataacccaaccaatttttcatcctcaact
gcagctgcttcatcaactacaactgcttcaaatactaatccaactgcaactactactaca
accaccaccaccacatcatcttcatctccaccacaaccacaactacaaccatcttcacca
ttatctgaagataaaaataaatcaccaccaactcaaccactcgaagaacttgttatcgca
gagactatatcaactattaatacagtaacagcaccaacaccaacaccaacaccaactcaa
actacaaattctgcatcatcaccaccaccatcttcatcatcaacatcatcaccaaccagt
acagctaatttatcaacaaacccaccagagaaaagaagtagaagtagatttgaatttgct
aaagattcatcaagaaacagtgttgatactacaggctcattatcatcttcaaccaataat
acagcatcacttattacaccagatatgtttttcagtattcaatctgaacaataccaatta
ccaaccctctcatcgcttcaccatccaaatggtgttgaaccaactttaaattctcaatca
ataatagaaaattctttaaatctaaatttggttggaaatcgtagtttaaataatagtcaa
aataatattaataatcaaaccaatagtttaaataatagtggcagtaataatttaatattt
aataacgattataataacaataataataataataataacaataatagctttagtaataat
atagagaatgaagattcatctcaacaatttttcagatcacttttcccttcagttaatatt
agattttcattcccaaatcaacaagtttctcaaccttctttaaatggcaacaacagtaat
aataatataaatattaataataataataccaataataataatagtaataataataataat
aataataataataataataataataataataataataataataataataataataataat
aatagtagtataaatatgaatgatttcccaccacttgaaagtagtggatcaagtattaaa
acattccaagatccagcaattgttaattcatataaatcaaatggtgacggaaattcagta
tggaaagttataccaaataataatcctttaaataatagtaatagtaatatatatggtaat
aataataataataataatagtaatggtaatttgaatttaagaaaatctgttacatcatca
gtatcacctccaccaggatttggtggtttcgattcacaaaaacctatggtgaatccacca
ccaggttttgctccgacaccaccaccaccaggttttcaaaacattataccaccaccaggt
tttcaaagtaataacaacaccaccacaaccaacaacaacaacagcacaaacaataataac
aacaacaacaatggtaatagtctcaataatagttctagtactattaatggcaatcaatta
ttatcaatggttaataatggtttaatgagtggtccaactccttttgttgacccatcaaat
ctttttgattctcaatatgataatgatatgttggcaatggaaaatattaaaaataaagat
aaaaagaaaaataaagaagaacaagaacaagaacaacttcaacttcaacatcaacttcat
caacaacaaatgctacaacaacttcatcaacaacaacaacaacaacttaacaacaacaac
aacaacaacaacaacaacaacaacaacaacaataataataataataataataataataat
aataatgattatcaaattcaaatgcaacttttacaacaacaacaacaacttcaacaactt
caaatgcgtctacaacaacaacaacagcaacaacaacaacattttcaatcacaaccacaa
cagcaacaacaacaacaacaacaaatccttcatttacaacaacttttacaacaacaacaa
caacaacaacaacaacaacaacaacaacaacaacaacagcaacaacagcaacagcaacaa
ccatcaaaagataacctttttttaccacaattcaatggaatgtcaaattcaccacaacaa
caacaaaacaatatttttaatatgaattcattttatcagcaacaacaacaacaacaagca
caaaaacaaaacaattcaccattcccatatggatttcaacaaccaccaatcattcctaat
ggaaatttaagaccaccaggaatgactcaattgggttatcaacaaataccaccaggtatg
cataataataataataataatccaaataataatagtaatagcagcaataataataataac
tctaatttcattgattttttaagacaaagtggaatcacaatgaatgatgatgttaatagc
agcggtatgatgacaccttcctcccttttaaatgattcctcattagaacatcgtgtagca
tccacaaataaagaacttaaggatttagaagacaaattacaaaaatcatcacctttaaat
actcaatcatattatagataa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (187)   
   KEGG ORTHOLOGY (1)   
   RefGene (182)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   DICTYBASE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (210)   

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