KEGG   Dictyostelium discoideum (cellular slime mold): DDB_G0280529
Entry
DDB_G0280529      CDS       T00245                                 
Symbol
cstf2
Name
(RefSeq) RNA recognition motif-containing protein RRM
  KO
K14407  cleavage stimulation factor subunit 2
Organism
ddi  Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ddi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    DDB_G0280529 (cstf2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ddi03019]
    DDB_G0280529 (cstf2)
Messenger RNA biogenesis [BR:ddi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     DDB_G0280529 (cstf2)
    U7-dependent histone pre-mRNA processing factors
     DDB_G0280529 (cstf2)
SSDB
Motif
Pfam: RRM_1 CSTF2_hinge RRM_7
Other DBs
NCBI-GeneID: 8622595
NCBI-ProteinID: XP_641214
dictyBase: DDB_G0280529
UniProt: Q54V94
Position
3:3461453..3464060
AA seq 541 aa
MSKSVFVGNIPYEANEKDLIEIFSGVGKVVSFRLLEDKDSKKSKGYGFCEYENVDNALSA
IRNYMLFTFGNRVLRVSYADNEKASEMQMLMQQQMGNTGGQMIPNDPRIQHGAQNQQQNQ
QQQQNQQQQNQQQWRGNDIQQQQQQQQQQHINQQQNQQQQNQQQNQQQQQQQLSPQQTKN
AIQNIIESTNPAQLFEMLSNMKSFVQHQPDQAISILINYPQMGLALLHAQVVLGMISQNA
ATQILLSNPKNQQPQQQQQQQQPQPQQQPQPQNFNQSPTMYNNQNNNQMMGMQQGNMGGP
QGNQMMGMGGNNMGMGVGAVNNGPQTNQMMGGNNMGMGGPQGGNMGNNMNNMGNNMGGNN
MGNNMNNMGNMGNMGNMGNMGNMGNMGNMGNMGNMNMGSMGNNNMNNMNQQQRQQQQQQQ
QGGNNMNMGNMGNNMNNMNMNNNMNNNMNNNMNNMNNMNNMMNNMNNMGNMGNMMNQQQQ
GGSIPPPPGLSPVAMASWNQLGDKYKQFASYVLSLTQQQIDQVPESQRPQIIKIRQQFGR
N
NT seq 1626 nt   +upstreamnt  +downstreamnt
atgtcaaagagtgtatttgttggaaatattccatacgaagcaaatgaaaaagatttaatt
gaaatattttcaggtgttggtaaagttgtttcatttagattattagaagataaagattca
aaaaaatctaaaggttatggtttttgtgaatatgaaaatgttgataatgcattatcagca
attagaaattatatgttgtttacttttggtaatagagtacttagggtatcatatgcagat
aatgaaaaagcaagtgaaatgcaaatgttaatgcaacaacaaatgggaaatacaggtggt
caaatgataccaaatgatccaagaattcaacatggtgctcaaaatcaacaacaaaaccag
caacaacaacagaatcaacaacaacaaaatcagcaacaatggagaggaaatgatatacag
caacaacaacaacaacaacaacaacaacatattaatcaacaacaaaatcaacaacaacaa
aatcaacaacaaaatcaacaacaacaacaacaacaattatcaccacaacaaacaaagaat
gcaatacaaaatattatagaaagtacaaatccagctcaattatttgaaatgttgagtaat
atgaaaagttttgttcaacatcaaccagatcaagcaatatctatactgattaattatcct
caaatgggtttagcattacttcatgctcaagtagttttaggtatgatttctcaaaatgct
gccactcaaattttattaagtaatccaaagaatcaacaaccacaacaacaacaacaacaa
caacaaccacaaccacaacaacaaccacaaccacaaaactttaatcaatcaccaacaatg
tataataatcaaaataataatcaaatgatgggaatgcaacaaggtaatatgggaggtccg
caaggtaatcaaatgatgggtatgggtggtaataatatgggtatgggtgttggtgctgtc
aataatggcccacaaactaatcaaatgatgggtggtaataatatgggtatgggtggtcca
caaggtggtaatatgggtaataatatgaataatatgggtaataatatgggtggtaataat
atgggtaataatatgaataatatgggtaatatgggtaatatgggtaatatgggtaatatg
ggtaatatgggcaacatgggtaatatgggtaatatgggtaatatgaatatgggtagtatg
ggtaataataatatgaataatatgaaccaacaacaacgacaacaacaacaacaacaacaa
caaggtggaaataatatgaatatgggtaatatgggtaataatatgaataatatgaatatg
aataataatatgaataataatatgaataataatatgaataatatgaataatatgaataat
atgatgaataatatgaataatatgggtaatatgggtaatatgatgaatcaacaacaacaa
ggtggtagtatcccacctccacctggtttatcacctgttgcaatggcaagttggaatcaa
ttaggtgataaatataaacaattcgcaagttatgttttaagtctcacccaacaacaaatt
gatcaagttcctgagagtcaaagacctcaaatcattaaaatcagacaacaatttggtaga
aattaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (68)   
   KEGG ORTHOLOGY (1)   
   RefGene (63)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   DICTYBASE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (78)   

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