KEGG   Dictyostelium discoideum (cellular slime mold): DDB_G0282569
Entry
DDB_G0282569      CDS       T00245                                 
Symbol
sf3b3
Name
(RefSeq) CPSF domain-containing protein
  KO
K12830  splicing factor 3B subunit 3
Organism
ddi  Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ddi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    DDB_G0282569 (sf3b3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ddi03021]
    DDB_G0282569 (sf3b3)
   03041 Spliceosome [BR:ddi03041]
    DDB_G0282569 (sf3b3)
   03036 Chromosome and associated proteins [BR:ddi03036]
    DDB_G0282569 (sf3b3)
Transcription machinery [BR:ddi03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     DDB_G0282569 (sf3b3)
Spliceosome [BR:ddi03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    DDB_G0282569 (sf3b3)
 Complex B
    DDB_G0282569 (sf3b3)
 Complex C
   U2 SnRNP specific factors
    DDB_G0282569 (sf3b3)
Chromosome and associated proteins [BR:ddi03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     DDB_G0282569 (sf3b3)
    TFTC complex
     DDB_G0282569 (sf3b3)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 8623669
NCBI-ProteinID: XP_640132
dictyBase: DDB_G0282569
UniProt: Q54SA7
Position
3:complement(5947254..5951124)
AA seq 1256 aa
MYLYNLTLQRPTSVYQSISGNFSGTKQVEIVLNHGRSLELIRYDENGKMQSVLYTEVFGI
VRSIIPFRLTSGTKDYIIVGSDSGRVVILEYNSQKNQFDKIHQETFGRSGCRRIVPGQYL
AVDPKGRAFMIGAIEKQKLVYILNRDSSANLTISSPLEAHKSNTIVFSMCGVDVGFDNPI
FATISVDYTEEDSSSGGGGGGSIEEMMDEDIGKKKKLLTYYELDLGLNNVVRKWSDQVDD
SANIVMTVPGGTEGPGGVLVASEDYIVYRNQDHAEVRSRIPRRYGSDPNKGVLIISHSSH
KQKGMFFFLVQSEHGDLYKITLDYQGDQVSEVNVNYFDTIVLANCLTVLKNGFLFAASEF
GDHTLYFFKSIGDEEEEGQAKRLEDKDGHLWFTPRNSCGTKMEELKNLEPTSHLSSLSPI
IDFKVLDLVREENPQLYSLCGTGLNSSLKVLRHGLSVTTITTANLPGVPSGIWTVPKSTS
PNAIDQTDKYIVVSFVGTTSVLSVGDTIQENHESGILETTTTLLVKSMGDDAIIQVFPTG
FRHIKSDLRINEWRAPGRKTIVRASANQSQLAIALSGGEIIYFELDQASNLIEIIKKDLR
RDIACIEISPIPKGRNMARFIAVSDWEGPIRVLSLDRDNCLGQVSMLDTDKVYIESLSII
EMQLNEMGIETKKSQSQTGQTTTTTTSTSSASSSVTSGGSLFLFVGLKNGVVKRATLDSV
TGELSDIRTRLLGRKPVKLFKVKVRGSNAMLALSSRVWLNYINQGKLDIVPLSIEPLENA
SNLSSEQSAESIVATSENKIIIFSIDKLGDLFNQETIKLNATPKRFIIHPQTSYIIILET
ETNYNTDNIDIDKINEQSEKLLLEKQKELQQEMDIDDDDQNNNNEIEPFKKLFKPKAGKG
KWKSYIKIMDPITHESLESLMLEDGEAGFSVCTCSFGESGEIFLVVGCVTDMVLNPKSHK
SAHLNLYRFIDGGKKLELLYKTEVEEPVYAMAQFQGKLVCGVGKSIRIYDMGKKKLLRKC
ETKNLPNTIVNIHSLGDRLVVGDIQESIHFIKYKRSENMLYVFADDLAPRWMTSSVMLDY
DTVAGADKFGNIFVLRLPLLISDEVEEDPTGTKLKFESGTLNGAPHKLDHIANFFVGDTV
TTLNKTSLVVGGPEVILYTTISGAIGALIPFTSREDVDFFSTLEMNMRSDCLPLCGRDHL
AYRSYYFPVKNIIDGDLCEQFSTLNYQKQLSISEELSRSPSEVIKKLEEIRSQKLL
NT seq 3771 nt   +upstreamnt  +downstreamnt
atgtatttatataatttaacattacaaagaccaacatcggtatatcaatcgattagtggt
aatttttcaggtacaaaacaagttgaaatagtattaaatcatggtagatcattagaattg
attagatatgatgaaaatggtaaaatgcaatcagtattatatacagaagtatttggtata
gttagatcaataataccatttcgtttaacaagtggtactaaagattatattatcgtaggt
tcagattctggtcgtgttgtaatcttggaatataattcacaaaagaatcaatttgataaa
attcatcaagaaacttttggtcgttcaggttgtcgtcgtattgtacctggtcaatattta
gcagttgatccaaaaggaagagcttttatgattggtgcaattgaaaaacaaaaattagtt
tatattttaaatagagattcatcagcaaatttaacaatttcatcaccattggaggcacat
aaatcaaatacaattgtattttcaatgtgtggtgttgatgttggatttgataacccaata
tttgcaaccatatcagttgattatacagaggaggatagtagtagtggtggtggtggtggt
ggatcaattgaggagatgatggatgaagatattggaaagaaaaagaaattgttgacttat
tatgaattggatttaggtttaaataatgttgttagaaaatggagtgatcaagttgacgac
agtgcaaacatagtgatgacagtaccaggtggtacagagggaccaggtggtgtattggta
gcatcagaggattatatagtgtatcgtaaccaagatcatgcagaggtgcgttctagaata
ccacgtagatatggtagtgaccccaataaaggagtattgataatctctcattcatcacat
aaacaaaagggaatgttcttctttttagtgcaatcagagcatggagatctttacaagatc
acattggactaccagggtgaccaggtttcagaggtgaatgtaaactatttcgacacgata
gtattggcaaattgtttaaccgtattgaagaacggcttccttttcgctgcatcagaattt
ggtgatcatacattatactttttcaaatcgattggtgacgaggaggaagagggccaagcc
aagagattggaggataaggacggccatctttggttcactcctagaaattcatgtggtact
aaaatggaggagttgaagaatttggagccaacatcacatttatcatcgttgtcacccatt
atcgatttcaaagttttggatttagttagggaagagaaccctcaactctattcattatgt
ggtactggcttgaattcgtcattgaaggtgttacgacatggcctatcggttaccacaatc
accactgccaatttacctggtgtgccaagtggaatttggacagtaccaaaatcaacctca
cccaatgcaatcgaccaaactgataaatatatagttgtatcattcgttggtactacatca
gtgttaagtgttggtgataccattcaagagaatcatgagagtggtatattggagactaca
accacactattagtgaaatcaatgggagacgatgcaattattcaagtgttcccaacaggt
ttccgtcatattaaatccgatttaagaattaatgaatggagagcaccaggcagaaaaacc
attgtacgtgcatcagctaatcaatcacaattggcgattgcattaagtggtggtgaaatc
atttatttcgaattggatcaagcatcaaatttaattgaaatcattaaaaaagatcttaga
agagatatagcatgcattgaaatttcaccaattccaaaaggtagaaatatggcacgtttc
attgcagtatccgattgggaaggtccaattagagttctttcattagatcgtgataattgt
ttaggtcaagtttcaatgttagatactgataaagtttatattgaaagtttatcaattatt
gaaatgcaattaaatgaaatgggtattgaaactaaaaaatcacaatcacaaactggtcaa
accaccacaacaacaacctcaacctcatcagcaagtagttcagtcacaagtggtggatca
ttatttttatttgttggtttaaaaaatggtgttgttaaacgtgcaacattagatagtgtt
acaggtgaattatcagatattagaacaagattattaggtagaaaaccggtgaaattattt
aaagttaaagttagaggttcaaatgcaatgttagcattatcaagtagagtttggttaaat
tatattaatcaaggtaaattagatattgtaccattatcaattgaaccattagagaatgca
tccaatctttcatcggaacaatcagcagagagtattgtagcaacaagtgaaaataaaatc
ataattttctcaattgataaattgggtgatttattcaatcaagaaactattaaattaaat
gcaacaccaaaaagatttataattcatccacaaacaagttatatcataattttagagact
gaaacaaattataatacagataatattgatattgataaaattaatgaacaatctgaaaaa
ttattattagaaaaacaaaaagagttacaacaagaaatggatattgatgatgatgatcaa
aataataataatgaaattgaaccatttaaaaaattatttaaaccaaaagctggtaaaggt
aaatggaaatcttatattaaaattatggatccaattacacatgaatctttagagtcattg
atgttggaagatggtgaggcaggatttagtgtttgtacatgttcatttggtgaaagtggt
gagatatttttagtggttggttgtgtaactgatatggtattaaatccaaagagtcataag
agtgcacatttaaatctttatcgtttcattgatggtggtaagaaattggagttactttat
aagaccgaggtggaggaaccagtttatgcaatggcacagtttcaaggtaaattggtttgt
ggtgttggtaaatcaatacgtatctatgatatgggtaaaaagaaattacttagaaaatgt
gagacaaagaatctaccaaatacaatcgtcaatattcatagtttaggcgacaggttggtg
gttggtgacatccaagagagcattcatttcataaagtataaacgatcagagaatatgtta
tatgtgtttgcagatgatttagcaccacgttggatgacttcatcggttatgttggattat
gatacggttgcgggtgccgataagtttggtaatatctttgtattacgtttaccattacta
atctctgatgaggttgaagaggatccaactggcactaaattgaaatttgaaagtggcact
ttaaacggcgcccctcataaattggaccatatagctaatttctttgttggtgataccgtt
acaactttaaataaaacttcattggtagtcggtggaccagaggttatactatacacaacc
atcagtggtgccattggtgccttaatccccttcacatcaagagaggacgtagatttcttt
tcaacattagaaatgaatatgagatccgattgtctaccattatgcggtcgtgatcatctt
gcctatcgttcctattatttcccagttaaaaatattatcgatggtgacctttgtgaacaa
ttctcaactttaaattatcaaaaacaattatcaatctctgaagaattatcaagatcacct
tctgaagttattaaaaaattagaagaaattagatctcaaaaattattataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (67)   
   KEGG ORTHOLOGY (1)   
   RefGene (62)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   DICTYBASE (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (79)   

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