KEGG   Dictyostelium discoideum (cellular slime mold): DDB_G0285293
Entry
DDB_G0285293      CDS       T00245                                 
Symbol
spt4
Name
(RefSeq) transcription initiation factor Spt4
  KO
K15171  transcription elongation factor SPT4
Organism
ddi  Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ddi00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    DDB_G0285293 (spt4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ddi03021]
    DDB_G0285293 (spt4)
   03019 Messenger RNA biogenesis [BR:ddi03019]
    DDB_G0285293 (spt4)
Transcription machinery [BR:ddi03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     DDB_G0285293 (spt4)
  RNA polymerase I system
     DDB_G0285293 (spt4)
Messenger RNA biogenesis [BR:ddi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     DDB_G0285293 (spt4)
SSDB
Motif
Pfam: Spt4 zf-C2HC5
Other DBs
NCBI-GeneID: 8625035
NCBI-ProteinID: XP_638317
dictyBase: DDB_G0285293
UniProt: Q54NF2
Position
4:3068070..3068424
AA seq 91 aa
MSKRSGRDESIVPSSFKHARACTECGLVKSAQQFEDNGCENCSSSSSSTTQNFEGIIAIM
NPKESWIARRLQFERRVPGLYALSMDSDTRR
NT seq 276 nt   +upstreamnt  +downstreamnt
atgagcaaacgaagtggaagagacgaatccattgttccttcatcatttaaacacgcaaga
gcatgtactgaatgtggtcttgttaaatcagctcaacaatttgaagataatggttgtgaa
aattgttcatcatcatcttcatcaacaactcaaaactttgaaggtattattgccattatg
aacccaaaagaaagttggattgctagaagattacaatttgaaagaagagtaccaggtctc
tatgcattaagtatggattcagatacaagaagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   DICTYBASE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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