KEGG   Dictyostelium discoideum (cellular slime mold): DDB_G0275759
Entry
DDB_G0275759      CDS       T00245                                 
Symbol
rpa1
Name
(RefSeq) RNA polymerase I, largest subunit
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
ddi  Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ddi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DDB_G0275759 (rpa1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ddi03021]
    DDB_G0275759 (rpa1)
Enzymes [BR:ddi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DDB_G0275759 (rpa1)
Transcription machinery [BR:ddi03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     DDB_G0275759 (rpa1)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 SH3_13
Other DBs
NCBI-GeneID: 8620100
NCBI-ProteinID: XP_643519
dictyBase: DDB_G0275759
UniProt: Q86H36
Position
2:5808489..5813651
AA seq 1615 aa
MSMSQSALIKEEISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTG
PAERCATCSLDFIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHCHHFKHGKPIINQ
FIEELTLLFKGDVVKARNLRERNVLLRGYEEKKKGKSNEEGEEVMESDESDSDKMDTDEN
KTNGKIICDGVFNAKEIYSGKATHIEDFKREVFKEFFGSFSGYAIPCGNCGAYSPRLRNG
DASKSKLFIMPLHDKYATKNSAIKLPTNFSSVKEQTEHGTWFAPWEVLDNMKKLFENEKE
ILDMLLGHLVPIVTNKGGAKKNVGRQFTKESNVDSLFMRVFPVTPARYRPPNFVNGRRSE
HPQNSHYKGMVKSNKMIRQSIDAGEGKAKFLVNSVCDLQMHVNNMYDNSKSNSNTNEVAN
GIKQILEKKEGLFRKHMMGKRVNYAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSF
NYNQLAQAVINGPEQYPGANFIEDENGHLINLSKESQEKRIALSKTLLTSHPHAPRGVNK
KVYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMN
IHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQA
ILYASCWSVNTKHPIVTPPPCILKPVPLWSGKQLISAALNQLTIGRAPLNLEAPSKIPTK
MWGTKGLEITRDSHVIIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLG
RMFTNYLQSRGFTCGVDDLLMKNKEEKFRVETLKKANEEGYTVAAKFADLSKYDEQKARD
FFSKALQSEREVARLDGLLKKGLNQYTSKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSV
VNFSQVSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFF
HCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEI
GKTPYLTKFPIIAENYELFKSQFPMEQLIEQLKNQEVVEYNRSIKTQPELDPVMSKFNPS
SDLGCVSESFMNQLNHYIESNPQKLIKTTSNRDGKINEKDFRNLMYLYYSRSMVSPGESV
GLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLRELIMTATTKPITPLMEFQINDS
TNKVETEKMAKYLEILKLSDIIKDITVQEYFQDTNRNYDIEIEFIPTLQQVLSLHRIKEK
QLNKLFGEFNKVIKRQVKSQGKLKVNNGDIGLGSKVRGSDLVEDDSLTINDDDAPANDDT
TNNDENTSQQQPSSQNKKSKSKVITQDDDSVAAKSKNKKKQNVNYEDGEEEAEEKDSDEG
ESEAEESDDKSDVDSDSDEISNSRSSNSFSDESIEFDQKKLTFTISVASDSKKVLMLGIV
ETEASKFVLKSCKGITRCFVNEKQVGGKTHYSIQSEGVNLSEIFELRDKLKIDEIYTNDI
YAILQKYGVEACRQAVTSEISNVFAAYGISVDKRHLILLGDYMTFEGGYRALNRIGIENN
TSPFQKMSFETTFSFLSKASLMGDYDTVTSPSSRIVLGQIVKNGTGSFTIVAPVK
NT seq 4848 nt   +upstreamnt  +downstreamnt
atgtcaatgtcacaaagtgcattaattaaagaagagatctcaagtgtatcttttcaattc
tatacatcagatgatgttagaaaattaagtgttaaacaaattgtagagattgaatcattc
gatatgttgggtggtccagttccaggtggtttacatgatccagctttaggtccaactggt
ccagctgaaagatgcgcaacatgttcattggattttattgaatgtccaggtcattttggt
catattgaattagcaattccatgttataatccagttagttttcaaacaattttcaaatta
ttaaaaaataaatgtttccattgtcatcattttaaacatggtaaaccaattattaatcaa
tttattgaagaattaacattattatttaaaggtgatgttgttaaagcaagaaatttaaga
gaaagaaatgttttacttagaggttatgaagagaaaaagaaaggaaaatcaaatgaagaa
ggcgaagaagtaatggaatcagatgaatcagattcagataaaatggatactgatgagaat
aaaacaaatggtaaaattatttgtgatggtgtttttaatgcaaaagaaatctattcaggt
aaagcaacacatattgaagattttaagagagaagtttttaaagaattctttggatcattc
tctggttatgctataccatgtggtaattgtggtgcatattcaccacgtttacgtaatggt
gatgcatcaaaatccaaacttttcattatgcctttacatgataaatatgccactaaaaac
agtgctatcaaacttccaaccaatttttcatcagttaaagaacaaaccgaacatggtact
tggtttgcaccatgggaggttttagataatatgaagaaattatttgaaaatgaaaaagag
attttagatatgttattgggtcatttggtaccaatcgtcacaaacaagggaggagcaaag
aaaaatgttggtcgtcaattcaccaaggaatcaaatgttgatagtttatttatgagagtt
ttcccagttacaccagcacgttatcgtccaccaaattttgtaaatggtcgtcgttcagaa
catccacaaaactctcattataaaggtatggtaaaatcgaataaaatgattcgtcaatct
attgatgccggtgaaggtaaagctaaattcttggtaaattcagtttgtgatttacaaatg
catgtcaataatatgtatgataattccaaatcaaattcaaataccaatgaggttgccaat
ggtattaaacaaattctcgagaagaaggaaggtcttttcagaaaacatatgatgggtaaa
cgtgttaattatgctgcacgtactgtaatttcaccagatatttcattagagaccaatgaa
atgggtgtacctcaatattttgccaaaacattaacattcccacaaccagttacatctttt
aattataatcaattggcacaagctgttatcaatggtccagagcaatatccaggtgcaaat
ttcattgaagatgaaaatggtcatttaattaatctttcaaaagaatcacaagagaaaaga
attgcactctctaaaaccctcttaactagtcatccacatgcaccacgtggtgttaataaa
aaagtttatcgtcatttattatctggtgattatgtattggcaaatcgtcaaccaacactt
cacaaaccaggtattatgggtcatcgtgttaaggttttaggtaaaaatgaaaagacactt
cgtatgcattattcaaattgttcaacttataatgcagatttcgatggtgatgaaatgaat
attcatttcccacaatctttattggcatctgctgaaattcgtgaaatttgcgcaaacaat
tatcaatacttggtaccaagaaatggtgcaccacttagaggtttaattcaagatcatatt
ttaaccggtgtacttttaaccaaacgtgatactctctttaccaaagccgatttccaagca
attctctatgcatcttgttggtctgtcaatactaaacatccaattgttacaccaccacca
tgtattttaaaaccagttccattatggtcaggtaaacaattgattagtgctgctttgaat
caacttacaattggtcgtgctccattgaatttagaggcaccatcaaaaattccaactaaa
atgtggggtactaaaggtttggagattactcgtgactctcacgttatcattcgtcaaaat
gaaatggttgctggtattcttgataaaggtcatttcggtgcaagtagttatggtttggtt
catacttgttatgaactttatgatccagatgttgctggttcccttttaacactattaggt
cgtatgtttacaaattatcttcaatcacgtggtttcacttgtggtgtagacgatctttta
atgaagaacaaagaagagaagttcagagttgaaactttaaagaaagcaaatgaagaaggt
tataccgttgctgctaaatttgctgatttatcaaaatatgatgaacaaaaagctagagat
ttcttttcaaaagcactccaaagtgaaagagaagttgcacgtcttgatggtttgttaaag
aaaggtttaaatcaatatacctctaaagttattgatactttaattccaggtggtcaacaa
aaacctttcccaaagaataatttctcattgatgactgtttccggtgctaaaggtagtgtt
gtaaatttctcacaagtttcatgtctattgggtcaacaggagttggagggtaaacgtgta
ccacgtatggttagtggtaaaacattaccaagtttccaagcttatgatgcctctgcaaga
gctggtggtttcgttatggatcgtttcttgactggtgtacgtccacaagattatttcttc
cattgtatggctggtagagagggtttaatcgatactgcagttaaaacatcacgttctggt
tatcttcaacgttgtctcattaaacatttggaaggtttatcagttcaatatgataataca
gttagagaatccgatggttcagtaattcaattcaattatggtgaagattcattagagatt
ggtaaaactccataccttactaaattcccaatcattgcagaaaactatgaattatttaaa
tcacaattcccaatggaacaattgattgaacaattaaagaatcaagaggttgttgaatat
aatcgttcaattaagactcaaccagaattggatccagttatgagtaaatttaatccatct
tccgatttaggttgtgtttctgaaagttttatgaatcaattaaatcattacattgaaagt
aatccacaaaaattaattaaaaccaccagcaatcgtgatggtaaaatcaatgaaaaagat
ttccgtaatcttatgtatctctattattcacgtagtatggtttctccaggtgaaagtgtt
ggtttactttgtgctcaatccattggtgaaccatcaactcaaatgactttaaatactttc
catttggctggtagaggtgaagcaaatgtaactttaggtattccacgtcttcgtgaatta
attatgacagcaactactaaaccaatcactccattaatggaattccaaattaatgattca
actaataaagttgaaactgaaaagatggcaaaatatttagagattttaaaactttccgat
attatcaaggatattaccgttcaagaatatttccaagataccaatagaaattatgatatt
gaaattgaattcattccaactttacaacaagttttatcattacatagaattaaagagaaa
caattaaataaattatttggtgaatttaataaagtaattaagagacaagttaagagtcaa
ggtaaattaaaagttaataatggtgatattggtttaggttcaaaagttagaggtagtgat
ttggttgaagatgattctttaacaattaatgacgatgatgctccagcaaatgatgatacc
accaataatgatgaaaatacttctcaacaacaaccatcatcacaaaataaaaaatcaaaa
tcaaaagttatcactcaagatgatgatagtgtagctgcaaaatcaaagaataaaaagaaa
caaaatgttaattatgaagatggtgaagaagaagccgaagaaaaagattctgatgaaggt
gaatctgaagctgaagaaagtgatgataaatctgatgtcgattcagattcagatgaaatt
tcaaattctcgttcatcaaatagtttcagtgatgaaagtattgaatttgatcaaaagaaa
ttaacatttacaattagtgttgcaagtgatagtaaaaaagttttaatgttgggtattgtc
gaaactgaagcctctaaatttgtacttaaatcttgtaaaggtatcactagatgttttgtt
aatgaaaaacaagttggtggtaaaactcattattccattcaatccgaaggtgttaatctt
tcagaaattttcgaacttcgtgataaattaaagattgatgaaatctataccaatgatatc
tatgctatccttcaaaagtatggtgttgaagcatgtcgtcaagctgttacctctgaaatt
tcaaatgtatttgctgcttatggtatctctgtcgataaacgtcatctcatccttttaggt
gattatatgacttttgaaggtggttatagagctttaaatcgtattggtattgaaaataat
acttctcctttccaaaaaatgtcttttgaaactactttctctttcctttcaaaagcttct
ttaatgggtgactatgatactgtcacttctccttcttcacgtatcgttttaggtcaaatc
gttaaaaatggtactggtagttttacaatcgttgctccagttaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (76)   
   KEGG ORTHOLOGY (1)   
   RefGene (71)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   DICTYBASE (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (92)   

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