KEGG   Desulfovibrio desulfuricans ATCC 27774: Ddes_1637
Entry
Ddes_1637         CDS       T00837                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
dds  Desulfovibrio desulfuricans ATCC 27774
Pathway
dds03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dds00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Ddes_1637
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dds03021]
    Ddes_1637
   03400 DNA repair and recombination proteins [BR:dds03400]
    Ddes_1637
Enzymes [BR:dds01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Ddes_1637
Transcription machinery [BR:dds03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Ddes_1637
DNA repair and recombination proteins [BR:dds03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Ddes_1637
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: ACL49536
UniProt: B8J1A9
Position
1965501..1969670
AA seq 1389 aa
MSLDDLFTARGTSANVTNIRNLKAIQISIASPEAIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDMTMADLEKVLYFDSYIVLDPGQTNLQKRQVISEDQYLQILDHYGSD
EVLTVGMGAEAVRSLLEELELEKLRTELREEGEATKSQTKKKKLTKRLKIVEAFLESDNK
PEWMIMEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPEIIIR
NEKRMLQEAVDALFDNGRRGRAIAGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRS
VITVGPYLKLHQCGLPKKMALELFKPFIYSELEKRGHASTIKSAKKMVEREELVVWDILS
EVVREYPILLNRAPTLHRLGIQAFEPLLVEGKAIRLHPLVCSAYNADFDGDQMAVHIPLS
VEAQIECRVLMMSTNNILSPANGGPVIVPSQDIVLGLYYMTVERSFEKGEGMSFCAPWEV
ESAYDGGMVSLHARVKVRMPDGHTYDTTPGRVLVSDILPEKLSFDHVNCVLTKKNIARLV
GAAYGQCGIKATVILCDKLKDMGYEFATRAGVTIGVKDLTIPDRKKDILATSQAEVDDIE
HQYRDGIITRTEKYNKVVDVWTKATQDVSTEMIKEISYDVLTDPKTGKQEKNQSFNPIFM
MSNSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLA
DTALKTANSGYLTRRLVDVVQDVIVAEHDCGTVDGIELTHLKDGGDVKTPLSERIIGRVL
LYPVHDPDAPEEILLPENTIISEKEAQIISDKGISSVTVRSPLTCQAERGICALCYGRDL
GRGHLVNTGETVGIIAAQSIGEPGTQLTMRTFHIGGTASSTIEKNKFEALNAGRVILNRV
KAVTNKDGVHLVLGKSGQLTIVDAQGREREKYILPNGARLLVHDGQEVVKGTVMAEWDPF
NEPFVCEEEGTLRFTDIIDGKTVQEKVDDITRQASLTIMEYRTTNFRPAISICDDNGNVK
KRSHGGAAAIYSLPVGSIIMVKDGEHIQAGDIIARKPRETAKTKDIVGGLPRVAELFEVR
KPKDMAVVSEISGTVTYAGESKGKRKLVVTPEIGEAKEYLVPKGKHITAADGDFVEAGDP
LTEGYPELHDILRTKGEKYLARYLVDEIQEVYRFQGVGIDDKHIEVIVRQMLKKVTILDT
GGTSFLVGEQVDKGEFKHENQKAIAEGRQPATAEPLVLGITQASLTTSSFISAASFQETT
KVLTEASLKGKMDYLRGLKENVIVGRLIPAGTGYREYVNGEIMVPDQKERPDKFLEELEE
NPILVDLNS
NT seq 4170 nt   +upstreamnt  +downstreamnt
atgagcctggacgatcttttcaccgctcgcggcacgtcggccaacgtgaccaacatccgc
aatctgaaagccatccagatttccattgcctctcctgaagccatccgcgaatggtcctat
ggcgaggtaaaaaagccggaaaccatcaactaccgtaccttcaagcctgagcgcgacggc
cttttctgcgccaagatcttcggccccgtgaaggactatgagtgcaactgcggcaagtac
aagcgcatgaagcaccgcggcattgtctgcgaaaaatgcggagttgaagtcattgcgtcc
aaggtgcgtcgcgagcgcatggggcacattgaactggccgcgcccgtagcccacatctgg
tttttgaagaccctgccttccaagatcggcaccctgctggacatgaccatggccgatctg
gaaaaggtgctgtactttgactcttacattgtgctcgacccgggccagaccaacctgcag
aaacgccaggtcatttccgaagaccagtatttgcagattctggaccactacggcagcgat
gaagtgctgaccgtgggcatgggtgctgaagccgtgcgcagcctgctggaagaactggag
cttgaaaagctgcgtaccgaactgcgcgaagaaggcgaggccaccaaaagccagaccaag
aagaaaaagcttaccaagcgtctcaagattgttgaggcttttcttgagtcggacaacaag
cccgaatggatgattatggaagttattcctgtcatcccgccggagctgcgtccgctcgtg
ccgctggacggcgggcgtttcgccacctccgacctcaacgatctgtaccgccgcgtcatc
aaccgtaacaaccgcttgaagcggcttatggagcttggcgcgccggaaatcatcatccgc
aacgaaaagcgcatgctgcaggaagcggtggacgccctctttgacaacggccgccgcggc
cgcgccattgcaggaaccaacggccgtcccctcaagtccctttcggacatgatcaagggc
aagcagggccgtttccgccagaacctgctgggcaagcgcgtggactattccgggcgttcg
gtcattaccgtcggcccttacctcaagctgcaccagtgcggtctgcccaagaagatggcg
cttgaactcttcaagcccttcatctattcggagctggaaaaacgcggtcatgcctccact
atcaaaagcgccaaaaaaatggtggagcgcgaagagctggttgtctgggacatcctgtca
gaagtggtgcgcgaataccctattcttctcaaccgcgccccgaccctgcaccgcctcggc
attcaggctttcgaaccgctgttggtcgaaggcaaggccatccgtctgcacccgctggtc
tgctccgcatacaacgcggactttgacggcgaccagatggctgtacatattcccctgtct
gtagaagcgcagatcgaatgccgcgtgctcatgatgagcaccaacaacattctttcaccc
gccaacggcggccctgttatcgtgccttcgcaggatatcgtgcttggcctctactatatg
acggtggaacgcagctttgaaaagggcgagggcatgagcttctgcgccccgtgggaagtg
gaaagcgcctatgacggcggcatggtttcgctgcacgcacgcgtcaaggtgcgcatgcct
gacgggcatacctacgacaccacgcccggccgtgtgcttgtgagcgacattctcccggaa
aagctgtcctttgaccatgtcaactgcgtgctgaccaagaagaatatcgcccgccttgtg
ggcgcggcctacggccagtgcggcatcaaggccacggtcattctttgcgacaagctcaag
gatatgggctacgagttcgccacccgcgccggtgtgaccatcggcgtcaaggacctgacc
attcccgaccgcaagaaagacattcttgccacgtcccaggccgaagtggacgacatcgaa
caccagtatcgtgacggtatcatcacccgtactgaaaagtacaacaaggtggtggacgtg
tggaccaaggccacgcaggacgtttccacggaaatgatcaaggaaatctcctacgatgtg
ctcactgatcccaaaaccggcaagcaggaaaagaaccagagtttcaaccccatcttcatg
atgtccaactccggcgcgcgaggcaaccaggaccagatgcgccagcttgcgggcatgcgc
ggccttatggccaagccttcgggtgaaattattgaaacgcccatcacctcctccttccgt
gaggggctgtcggtgttgcagtacttcacctccacacacggcgcgcgtaaaggtctggcg
gacacggccctcaaaacggccaactccggttacctcacccgccgcctggtggacgtggtg
caggatgtcatcgtggccgaacacgactgcggtacggtggacggcatcgaactgacccac
ctcaaggacggcggcgatgtcaaaacgcccctgtctgaacgcatcatcggccgcgtactg
ctctatccagtgcatgatcccgacgctccggaagaaatcctcttgcccgaaaacaccatc
atttcggaaaaagaggcccagatcatcagcgacaagggcatttcctcggttaccgtgcgc
tcgcccctcacctgccaggccgaacggggcatctgcgccttgtgctacgggcgtgacctt
ggccgcgggcacctggtcaatacgggcgagaccgtgggcatcatcgcggcacagtccatc
ggtgagcccggcacgcagctgaccatgcgtaccttccacatcggcggtacggcatccagc
accattgaaaagaacaagtttgaagccctcaacgcgggtcgcgtcatcctgaaccgggtc
aaagccgttaccaacaaggacggcgtgcacctggtgctgggcaagagcggccagctgacc
atcgtggacgctcagggccgcgaacgcgaaaagtacattctgcccaacggcgcacgcctg
ctggtgcacgatgggcaggaagtggtcaagggtacggtcatggccgaatgggaccccttc
aacgaaccttttgtgtgcgaagaagaaggtaccctgcgctttaccgacatcattgacggc
aagaccgtgcaggaaaaggtggacgacatcacccgtcaggccagcctgacaatcatggaa
taccgcaccaccaacttccgcccggccatctccatctgcgatgacaacggtaacgtgaaa
aagcgcagccacggcggcgcagcggccatctatagcctgcccgtcggctccatcatcatg
gtcaaggacggcgagcatatccaggctggcgacatcatcgcccgtaaaccccgcgaaact
gcaaaaaccaaggacatcgtgggcggtctgccccgcgtggccgagctttttgaggtgcgc
aagcccaaagacatggccgtggtttccgaaatatcgggtacggtcacctatgcgggcgaa
tccaagggcaagcgcaagctggttgtcacgcctgaaatcggcgaagccaaggaatacctg
gttcccaagggcaaacacattaccgccgctgacggcgactttgtggaggccggagacccg
ttgaccgaaggctaccccgaactgcacgacatcctgcgcaccaagggcgaaaaatacctg
gcccgctatctggtggacgaaattcaggaagtctaccgcttccagggcgtgggcattgac
gacaagcacattgaagtcatcgtgcgccagatgcttaaaaaagtgaccattctggatacc
ggcggcaccagcttcctggtgggcgaacaggtggacaagggcgaattcaagcatgaaaac
cagaaggctatcgccgagggccgccagcccgccacggcggaacctctggtgctgggcatc
acccaggcttcgcttaccacgtcctccttcatctcggcggcttccttccaggaaactacc
aaggttctcaccgaggcctccctcaagggcaagatggactacctgcgcggactcaaggag
aacgtcatcgtgggccgcctcattcctgctggtacaggctaccgtgaatacgtcaacggc
gagatcatggttcccgaccagaaggaacgccccgacaagttccttgaggagcttgaagaa
aaccctattctggttgatctgaacagctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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