KEGG   Dehalococcoides mccartyi BAV1: DehaBAV1_0415
Entry
DehaBAV1_0415     CDS       T00518                                 
Name
(GenBank) beta-lactamase domain protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
deb  Dehalococcoides mccartyi BAV1
Pathway
deb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:deb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DehaBAV1_0415
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:deb03019]
    DehaBAV1_0415
Messenger RNA biogenesis [BR:deb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     DehaBAV1_0415
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B_2 Lactamase_B Lactamase_B_6
Other DBs
NCBI-ProteinID: ABQ17000
Position
421901..423556
AA seq 551 aa
MAKPKLKIVPLGGLGEIGKNMMSVEYGEDIILIDCGLMFPEEEMLGIDLVIPDISYVLEN
REKVRGIVITHGHEDHIGALPYILPQINVPIYCTKLTQGLISVKLKEAKLLHQTKINVIP
SDGTFKLGKLKVDFYPVCHSLPDSVGLVIQTPIGAVVHSGDFKLDYTPVDGKPTNLSRLA
MLGARGVLLLMSDSTHVELPGYTPSETVVGENIDRIIGAATGRVLVTTFASLISRQQQVI
DAAAKYGRKLFFAGRSMTEIHKMATDLGYLKVPEGLVCNIEQLQRVPPEKVVLMTTGSQG
EPTSALVRIANRDFRHVHIMKGDTVIISASPIPGNESLVSRTIDSLFRQGAKVFYDRIAK
VHVHGHASQEELKLVLNLVKPKYFVPVHGEYRHLTMHAELARTMGVAPENAFVMEDGDIL
ELNTKSGRITGKVPSGNVYVDGLSVGDVGGVVLRNRRMLSQDGIVVAIVAINKQTGMLVG
RPDIVSRGFVDPDESKAMLDASRDLIIKLLDHDGKDIPEGAMYNDVKETLNKFYYEQTKR
RPMVIPVMVKV
NT seq 1656 nt   +upstreamnt  +downstreamnt
atggcaaaacctaaacttaagattgtacctctgggtggcctgggtgagataggcaagaat
atgatgtctgtagaatatggggaagacatcatcctgatagactgcgggcttatgttcccc
gaagaagaaatgctgggtatagatttggtaatacccgacatttcatatgtactggaaaac
cgtgaaaaagtacggggtattgtcattacccacgggcatgaagaccatataggggcgtta
ccctatatacttccccagataaatgtacctatttattgtactaaacttacccaagggctt
atttcggtaaagctgaaggaagccaaactgctccaccagaccaagataaatgttatcccg
tctgatggcactttcaagctgggtaaacttaaagtggatttttatccggtctgccatagc
ctgccggattcggtgggactggttatccagacgcctatcggggcggtagtccacagcggt
gatttcaaactggactatacgccggtagacggcaaacctaccaatctatcacgtttggct
atgctgggtgcacggggagtgctgctccttatgtcagactccacccatgtagaactgccg
ggttataccccctcggaaactgtggtgggcgaaaatattgaccgtattatcggggcggct
acggggcgggtactggttaccacctttgcttcgcttatttcccgccagcagcaggttatt
gatgccgctgccaaatacgggcgcaagctcttttttgccggccgcagcatgactgaaatt
cacaaaatggctaccgatttgggctaccttaaagtgcctgaaggtctggtatgcaatata
gagcagcttcagcgtgtacccccggagaaagtggttttgatgactaccggttctcagggt
gaacctacctctgcccttgttcgtatagccaaccgtgatttccgccatgtccacataatg
aaaggggataccgtaattatttcggcgtcccccatacccggcaatgaatcactggtaagc
cgtactatagacagccttttccgccaaggggccaaagtgttttatgaccgaatagccaaa
gtacatgtgcacgggcatgccagtcaggaagaactgaagctggtactcaatctggtcaaa
cccaagtactttgtgcccgtgcatggcgaataccgccacctgaccatgcatgccgagctt
gcccggactatgggtgttgctccggaaaatgcctttgtcatggaagacggggatatactg
gagttaaataccaagtccggtcgtattacgggcaaagtcccgtccggcaatgtctacgta
gatggtttgagtgtgggtgatgtgggcggggtggtactccgcaaccgccgtatgctttca
caggacggtatcgtagtggcaattgtggctattaacaagcaaaccggtatgctggtgggc
aggccggatattgtttccaggggatttgttgaccctgatgaatctaaagctatgctggat
gccagccgtgaccttataatcaagctgcttgaccatgacggtaaggatattcccgagggg
gctatgtataatgatgttaaagaaacgctgaacaagttttactacgagcagactaaacgg
cgtcccatggttatcccggttatggtaaaagtgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (12)   

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