KEGG   Dehalobacter sp. DCA: DHBDCA_p2113
Entry
DHBDCA_p2113      CDS       T02278                                 
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ded  Dehalobacter sp. DCA
Pathway
ded03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ded00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DHBDCA_p2113
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ded03400]
    DHBDCA_p2113
Enzymes [BR:ded01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DHBDCA_p2113
DNA repair and recombination proteins [BR:ded03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DHBDCA_p2113
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: AFV03140
Position
2150443..2151360
AA seq 305 aa
MNLEFDGKTLNITNPEKLLWPDLGIRKLDYLKILLELAPYLLPHVQDRLLTTIRYPDGFQ
GKSFFQKNIPDYAPGWIPTIEWRDNQYIILESEAILIWLGNQACLEFHIPFNPYDRDQYP
SALVFDLDPSEGQTFEDVTEAALLIFEELKALQITSYIKTSGASGLQIHIPTGGKYDYNT
ARKINEFFAVYFSQKYPRQITLERSVAKRGHKLYFDYLQMWQGKTIISPYSPRATAYASV
AAPLEWQELRHGVKPQDFNLLNISGRLKDKGDLFAPLLNKKNGQDRKNSQDLDFILERIV
AHRQP
NT seq 918 nt   +upstreamnt  +downstreamnt
atgaacctggaattcgacggcaaaacgctcaatataaccaaccctgaaaaattattatgg
cctgaccttggtatccgcaagcttgattatttgaaaatcctgctggaattagccccgtac
cttctgcctcacgtccaagaccgtctactgacgacgatccgttatcctgatggtttccag
ggcaagtccttcttccagaaaaatatccctgattatgcccctgggtggattccgacgatc
gaatggcgggataatcagtatatcattttagaatcagaagcaatcctcatttggctcgga
aaccaggcgtgtctggaattccacattccatttaacccatatgacagggatcagtatcct
tctgcactggttttcgatctggacccttccgaaggtcagacctttgaggatgtcacggaa
gcggccctgctgatttttgaagagcttaaagcgcttcagattacaagctatatcaaaact
tccggggcaagcggacttcagatccatattccgacaggcgggaagtatgattacaatact
gccagaaaaatcaacgaattttttgcggtttatttcagccagaaataccctcggcaaatt
accctggagcgcagtgtcgccaaaagaggccataagctctattttgactatctgcagatg
tggcagggcaaaaccatcatcagtccatattcaccaagagcaacagcctacgcctccgtt
gccgctccgctggaatggcaagagctgcggcacggggtcaaaccccaggattttaatctg
ctgaatatcagcggcaggctgaaggataaaggggatcttttcgctccgctgcttaataaa
aaaaatggacaagacaggaagaatagccaggatctcgattttatccttgaacggattgtg
gcccacagacaaccctag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (22)   

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