KEGG   Delftia sp. HK171: BO996_16245
Entry
BO996_16245       CDS       T04584                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
dhk  Delftia sp. HK171
Pathway
dhk03030  DNA replication
dhk03410  Base excision repair
dhk03420  Nucleotide excision repair
dhk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dhk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BO996_16245 (ligA)
   03410 Base excision repair
    BO996_16245 (ligA)
   03420 Nucleotide excision repair
    BO996_16245 (ligA)
   03430 Mismatch repair
    BO996_16245 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dhk03032]
    BO996_16245 (ligA)
   03400 DNA repair and recombination proteins [BR:dhk03400]
    BO996_16245 (ligA)
Enzymes [BR:dhk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BO996_16245 (ligA)
DNA replication proteins [BR:dhk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BO996_16245 (ligA)
DNA repair and recombination proteins [BR:dhk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BO996_16245 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BO996_16245 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     BO996_16245 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BO996_16245 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 5_3_exonuc
Other DBs
NCBI-ProteinID: APE49281
Position
3650801..3652912
AA seq 703 aa
MNDNLDLFSGAAPAAPESGAAPDKVLAKVQALRAQLNQWAHEYYVLDTPTVPDGEYDRVF
QQLQALEGAYPELVTPDSPTQRVIGAVLDGLMPVRHAVPMLSIRTETDNEATGAEAFDAR
IRKELELAEGAPPVEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRK
IPLSLPEGKGVPPVVEVRGEVYMGRADFVKLNERQQAAGGKSFANPRNAAAGSVRQLDSG
IAAQRPLSFFAYGLGEITPAAQGGPDFVTHYAMLQTLRDWGFPVAPQVCIAKGAAELVAF
HQRMGAERATLPYEIDGVVYKVNSLAQQRQLGFVSREPRWAVAHKYPAEEMPTRMEGIDI
QVGRTGKLTPVARLAPVAVGGVIVTNATLHNLFEIRKKRVRTGDTVVVRRAGDVIPEVVG
RVPGDRPAYVPNFRMPAACPICGSAVARPKGEANHRCTGGLFCPAQRKEAILHFAARRAM
DIEGLGDKLVDQLVDGHVVRTLPDLYRLGLVALASLDRMAEKSAQNVLDALEKSKKTTLA
RFLFGLGIRQVGESTAKDLARHFGQLDAIMDASVEQLLQVRDVGPIVAESIHTFFAQPHN
REVVEQLRACGVHWEEGAAREQTAQPLAGMTVVLTGTLPTLGRDQAKEMLEAAGAKVSGS
VSKKTSYVVAGAEAGSKLAKAEELGVTVLDEAGMLALLAGGDH
NT seq 2112 nt   +upstreamnt  +downstreamnt
atgaatgacaatctggatcttttctccggcgcagcccccgcggcgccggagtccggggcc
gcccccgacaaggtgctggccaaggtgcaggcgctgcgcgcccagctcaaccaatgggcg
catgagtactacgtgctggacacgcccaccgtgcccgatggcgagtacgaccgcgtcttc
cagcaactgcaggcgctggaaggtgcctaccccgaactggtcacgccggactcgcccacg
cagcgcgtgatcggcgccgtgctcgacggcctgatgcccgtgcgccatgccgtgcccatg
ctcagcatccgcaccgagaccgacaacgaggccacgggggccgaggccttcgacgcacgc
atccgcaaggagctggaactggccgaaggcgcgccgcccgtggagtacgtggccgagccc
aagttcgacggcctggccatgaacctgcgctacgagaacggccgcctggtgcaggccacc
acgcgcggcgacggcgaggtgggcgaggatgtcacccacaacatccgcaccatccgcaag
attccgctgtccctgcccgaaggcaagggcgtgccgcccgtggtcgaggtgcgcggcgag
gtctacatgggccgcgccgacttcgtcaagctcaacgagcgccagcaggccgctggcggc
aagagctttgccaatccgcgcaatgcggcggcaggctcggtgcgccagctggactcgggc
attgcggcgcagcgcccgctgtccttcttcgcctatggcctgggcgagatcacgccggct
gcccagggcggccccgacttcgtcacccactacgccatgctgcagacgctgcgcgactgg
ggctttccggtggcgccccaggtctgcatcgccaagggcgcggccgagctggtggccttc
caccagcgcatgggcgccgagcgcgccacgctgccctacgagatcgacggcgtggtctac
aaggtcaacagcctggcccagcagcgccagctgggctttgtctcgcgcgagccgcgctgg
gccgtggcccacaagtacccggccgaggaaatgcccacgcgcatggaaggcatcgacata
caggtcggccgcacgggcaagctcacgcccgtggcgcgcctggcccccgtggcggtgggc
ggcgtcatcgtcaccaatgccacgctgcacaacctgttcgagatccgcaagaagcgcgtg
cgcacgggcgacaccgtggtcgtgcgccgcgccggtgacgtgatccccgaggtcgtgggc
cgcgtgcccggcgaccggccggcctatgtgcccaacttccgcatgcccgctgcatgcccc
atctgcggcagcgccgtggcgcggcccaagggcgaggccaaccaccgctgcacgggcggc
ctgttctgcccggcgcagcgcaaggaggccatcctgcactttgccgcgcggcgcgccatg
gacatcgagggcctgggcgacaagctggtggaccagttggtggacggccatgtggtgcgc
acgctgcccgacctctaccgcctgggcctggtggccctggcatcgctggaccgcatggcc
gagaagtcggcccagaacgtgctggacgcgctggaaaaatccaagaagaccacgctggcg
cggttcctcttcggcttgggcatccgccaggtgggcgagtccacggccaaggacctggcc
cgccactttggccagctggacgccatcatggacgccagcgtcgagcaactgctgcaggtg
cgcgacgtggggcccatcgtggccgaaagcatccacaccttcttcgcccagccccacaac
cgcgaggtggtcgagcaactgcgtgcctgcggcgtgcactgggaagagggcgcggcgcgc
gagcagaccgcccagccgctggccggcatgaccgtggtgctcaccggcacgctgcccacg
ctgggccgcgaccaggccaaggagatgctggaggccgctggcgccaaggtctccggctcg
gtcagcaagaagaccagctatgtggtggccggcgccgaggccggcagcaagctggccaag
gccgaggaactgggcgtgaccgtgctggacgaggccggcatgctggcgctgctggcgggc
ggggaccactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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