KEGG   Dokdonella koreensis: I596_502
Entry
I596_502          CDS       T04377                                 
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
dko  Dokdonella koreensis
Brite
KEGG Orthology (KO) [BR:dko00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:dko03009]
    I596_502
Enzymes [BR:dko01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     I596_502
Ribosome biogenesis [BR:dko03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    I596_502
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 TRAM PCMT Methyltransf_25 RrnaAD MTS Methyltr_RsmB-F Methyltransf_15 Cons_hypoth95 Met_10 Methyltransf_23 Methyltransf_11 Bd3614-deam
Other DBs
NCBI-ProteinID: ANB16539
UniProt: A0A167GGR9
Position
605778..607076
AA seq 432 aa
MQPLAEVDITDLSHDGRGVARLHDKAVFVAGALPGERARIRIVRRHRSFDEAKVEELLVR
SAERIEPRCVHFGTCGGCALQHLPTDRQIAAKQRVLAENFERIGKVAPRTWLEPLTDAPW
GYRRKGRLSVKWVEKKGKVLVGFREEDPRFVADLSVCHTLLPQVGERIGALSELIAGLDA
KREIAQIEIAADDRTTALVFRHLVPLGDEDRARLVAFGRTHDLAILLQPKGPDSVQALEP
ERIDLRFRIPAADVELMFRPLDFIQVNAGMNQRMLAQALDLLDLREDDRVLDLFCGLGNF
TLPIARWAGSVVGVEGEAGLVARAGDNARHNGIDNAVFHAADLAQDQRAAGWAKAGYDKL
LLDPPRSGAAAVLDYLPRKGTDRVVYVSCHPGSLARDAGILVERHGFRLSTAGVMDMFPH
TAHVESIALFER
NT seq 1299 nt   +upstreamnt  +downstreamnt
atgcagccgctagccgaagtcgatatcaccgatctgtcccatgatggccgcggggtcgcc
cgcctccacgacaaggccgttttcgtcgccggcgcgctgccgggcgagcgcgcacgcatc
cgcatcgtgcgaaggcatcgcagcttcgacgaggccaaggtcgaggagctgctggtgcgc
tcggccgagcgcatcgagccgcgctgcgtgcacttcggcacctgtggaggctgcgccttg
cagcacctgccgacggaccggcagatcgccgccaagcagcgcgtgctggccgagaatttc
gagcggatcggcaaggtggccccgcggacctggctggaaccgctgaccgacgcaccctgg
ggctaccggcgcaagggccggctttcggtcaagtgggtcgaaaaaaagggcaaggtgctg
gtcggcttccgcgaggaggacccgcgcttcgtcgccgatctttcggtctgccatacgctg
ctgccgcaggtgggcgaacggatcggagccttgagcgaactgatcgccggtctcgacgcc
aagcgcgagatcgcgcagatcgagatcgccgccgacgaccggacgacggcactggtgttc
cggcacctggtgccgctcggcgacgaggatcgcgcccggctggtcgcgttcgggcgcacc
cacgacctggcgatcctgctgcagcccaaggggcccgacagcgtccaggcactcgaaccg
gagcggatcgacctgcgcttccgcatcccggcggcggacgtcgagctgatgttccggccg
ctcgacttcatccaggtcaacgccggcatgaaccagcgcatgctcgcgcaggcgctggac
ctgctcgacctgcgcgaggacgatcgcgtactggacctgttctgcggcctcggcaatttc
acgctgccgatcgcgcggtgggccggcagtgtcgtcggtgtcgagggcgaggccggcctg
gtcgcgcgtgccggtgacaacgcgcgccacaacggcatcgacaacgcggtgttccatgcc
gccgatctcgcgcaggaccagcgcgccgccggctgggccaaggccggctacgacaagctg
ctgctcgatccgccgcgatcgggcgccgccgcggtgctcgactacctgccgcgcaagggc
accgatcgcgtcgtctacgtgtcctgccatcccggctcgctcgcgcgcgatgccggtatc
ctggtcgagcgccacggcttccgcctcagcacggccggcgtcatggacatgtttccgcat
acggcgcacgtcgaatcgatcgccttgttcgagcgctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (32)   

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