KEGG   Drosophila melanogaster (fruit fly): Dmel_CG13900
Entry
Dmel_CG13900      CDS       T00030                                 
Symbol
Sf3b3
Name
(RefSeq) splicing factor 3b subunit 3, isoform A
  KO
K12830  splicing factor 3B subunit 3
Organism
dme  Drosophila melanogaster (fruit fly)
Pathway
dme03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Dmel_CG13900 (Sf3b3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dme03021]
    Dmel_CG13900 (Sf3b3)
   03041 Spliceosome [BR:dme03041]
    Dmel_CG13900 (Sf3b3)
   03036 Chromosome and associated proteins [BR:dme03036]
    Dmel_CG13900 (Sf3b3)
Transcription machinery [BR:dme03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     Dmel_CG13900 (Sf3b3)
Spliceosome [BR:dme03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    Dmel_CG13900 (Sf3b3)
 Complex B
    Dmel_CG13900 (Sf3b3)
 Complex C
   U2 SnRNP specific factors
    Dmel_CG13900 (Sf3b3)
Chromosome and associated proteins [BR:dme03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     Dmel_CG13900 (Sf3b3)
    TFTC complex
     Dmel_CG13900 (Sf3b3)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 38093
NCBI-ProteinID: NP_728546
FlyBase: FBgn0035162
UniProt: Q9W0M7
Position
3L
AA seq 1227 aa
MYLYNLTLQKATGVTHAVHGNFSGGKQQEVLLSRGKSLELLRPDSNTGKVHTLLSTEIFG
CVRALMAFRLTGGTKDYIVVGSDSGRIVILEYNPSKNALEKVHQETFGKSGCRRIVPGQY
FAIDPKGRAVMIGAVEKQKLAYIMNRDTQARLTISSPLEAHKSNTLTYHMVGVDVGFDNP
MFACLEIDYEEADMDPSGDAAQRTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLVSVPG
GNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFICSATHRTKSMYF
FLLQTEQGDIFKITLETDDDVVSEIKLKYFDTVPPATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGETFFFAPRALKNLVLVDELPSFAPIITSQVADLANEDT
PQLYVLCGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVKKRADDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLCCAALGDDALVQVYPDGIRHIRSDKRVNEWKAPG
KKSITKCAVNQRQVVITLSGRELVYFEMDPTGELNEYTERSEMPAEIMCMALGTVPEGEQ
RSWFLAVGLADNTVRILSLDPNNCLTPCSMQALPSPAESLCLVEMGHTESTTQGGLDDDA
PAQRSGNNKGTIYLNIGLSNGVLLRTVLDPVSGDLADTRTRYLGSRPVKLFRIKMQGSEA
VLAMSSRTWLSYYHQNRFHLTPLSYETLEYASGFSSEQCSEGIVAISTNTLRILALEKLG
AVFNQVAFPLQYTPRTFVIHPDTGRMLIAETDHNAYTEDTKSARKEQMAEEMRSAAGDEE
RELAREMANAFINEVLPEDVFSSPKAGLGLWASQIRCLDAMHGQTMFSVPLTQNEAIMSM
AMLKFSIAADGRYYLAVGIAKDLQLNPRISQGGCIDIYKIDPTCSSLEFMHRTDIDEIPG
ALCGFQGRLLAGCGRMLRIYDFGKKKMLRKCENKHIPYQIVNIQAMGHRVYVSDVQESVF
FIRYRRAENQLIIFADDTHPRWVTATTLLDYDTIAIADKFGNLSIQRLPHSVTDDVDEDP
TGTKSLWDRGLLSGASQKSENICSFHVGEIIMSLQKATLIPGGSEALIYATLSGTVGAFV
PFTSREDYDFFQHLEMHMRNENPPLCGRDHLSYRSSYYPVKNVLDGDLCEQYLSIEAAKQ
KSIAGDMFRTPNQICKKLEDIRTRYAF
NT seq 3684 nt   +upstreamnt  +downstreamnt
atgtatctgtacaacctgaccctgcagaaggccaccggcgtgacccacgcggtccacggc
aacttctccggcggcaagcagcaggaggtcctcctgtcgcgtggcaagtcgctggagcta
ctgcgtccggactccaacaccggcaaggtgcacaccctgctctccacggagatattcgga
tgcgttcgcgccctgatggcctttcgactgacgggcggcactaaagattacatagttgtg
ggctcggactcgggacgcatcgtgatcctcgagtacaatccctccaagaatgctcttgaa
aaagtgcaccaggagacgttcggaaagtcgggatgtcgcaggattgtgcctgggcaatac
tttgccatcgatcctaaaggaagagccgtgatgattggcgccgtggagaagcaaaagctg
gcctacatcatgaaccgggacacgcaggctcgcctcacgatctcatcgcccctggaggcc
cacaaatcgaatacactgacataccacatggtcggcgtggatgtgggcttcgataatccc
atgttcgcctgcctagagatcgactacgaagaggccgacatggatccatcgggtgacgcc
gcccagcgcactcagcaaacgctgactttctacgagttggatctcggcttaaaccacgtg
gttcgcaaatactcggagcccttggaagagcacgccaatttcttggtatccgtgcctggg
ggcaacgatggtccttcgggcgtgctgatctgctcggagaactacctaacgtacaagaat
ctcggcgatcagcacgatatccgctgtcccattccgcgcaggagaaacgatctggatgat
cccgaacgtggtatgatcttcatctgctcggccacacatcgcaccaagagcatgtacttc
ttcctgctgcagaccgagcagggagacatctttaagatcaccctggaaacggacgatgat
gtggtctccgagatcaagctaaagtacttcgatacagtgccgccggcaactgccatgtgc
gtgctaaagacgggtttcctgttcgtggccagcgagtttggcaaccactatctatatcaa
atcgctcatctgggtgacgacgatgacgagccggagttcagttcggccatgcctttggag
gagggtgaaaccttcttctttgcgccacgtgccctaaagaacctggtgcttgtggatgaa
ctgccctctttcgcaccgatcatcacctcccaggtggctgatctggccaacgaggacaca
ccgcaactgtacgttctttgcggacgaggaccgcgttccactctgcgggtgctgcgccac
ggcctcgaggtgtccgagatggccgtttccgaactgcctggtaatcccaatgcggtttgg
actgtgaagaaacgagctgatgacgagtttgatgcctatatcatcgtgtccttcgtgaat
gccaccctggttttgagcattggcgaaaccgtcgaggaagtcacggacagcggtttcctg
ggcaccacgcccacgctctgttgtgccgccctgggcgatgatgcgctggttcaggtttac
cccgatggcattcgacatatccgatccgacaagcgtgtgaacgagtggaaggctccgggc
aagaagtccattaccaagtgcgccgtgaatcagcgccaggtggtcatcaccttgtcgggc
agggagttggtctacttcgaaatggatccgactggggagctgaacgagtacacggaacgt
tccgagatgcctgctgagattatgtgcatggccttgggaactgttccggagggcgagcag
agatcctggttcttggccgtcggcctggcggataatacagtgcgcatcttatcgctggat
cccaacaactgtctcactccctgctccatgcaggccctgccttcgccagccgaatccctt
tgcctggtcgaaatgggtcacacggagagcacgactcagggaggtttggatgacgatgct
cccgctcagcgcagtggcaacaataagggaaccatttacctaaacattggcttgagcaac
ggtgtcctgctgagaactgtgctcgatcctgtttccggagatttggcagacacccgaacg
agatatttgggttcccgacccgtaaagctcttccggatcaagatgcagggatccgaagcg
gtgctggccatgtccagtcgaacctggctgtcgtactaccaccaaaatcgattccatttg
acgcctctgtcttatgaaacccttgagtatgcttctggcttctcgagcgagcagtgcagc
gaaggtatcgtggctatatccaccaacaccttgaggatcttggccctggagaaactggga
gccgtcttcaatcaagtagcgttccccttgcagtacactccacgtacctttgtaatccat
ccggatacgggacgcatgctaattgccgaaaccgatcacaacgcctacacagaggatacg
aagagtgcccgaaaggagcaaatggcggaggagatgcgcagtgcagctggcgatgaggaa
agggagttggcccgcgaaatggccaatgctttcatcaacgaagtccttcccgaggacgtg
ttttcgtcgcccaaagcaggactgggtctttgggcctcgcaaatccgttgcctggacgca
atgcatggtcagacgatgtttagtgtgccgctcacccaaaacgaggccattatgtcgatg
gccatgctgaagttctccatagcggctgatggccggtactacctggccgtgggaatcgcc
aaggatctgcagctgaatcccaggatttcgcaaggcggctgcatagatatctacaaaata
gatcccacttgctccagtctggaattcatgcaccgcacggacattgacgagattcctgga
gccctgtgtggcttccagggtcgtctactagctggctgcggtcgaatgttgcgaatctac
gatttcggcaagaagaaaatgctgcgcaaatgcgagaacaagcacattccctatcagatt
gtcaatatccaagccatgggtcatcgtgtttacgtgtcggatgttcaggaatcagtattt
ttcatacgctatcgtcgcgcggagaaccagctgattatatttgccgatgacacgcatcct
cgatgggtgacggccaccaccttgctggactatgataccatagccatagccgataagttt
ggcaacctgagcattcagcgattgccccactccgtaacggacgatgtggacgaggatcca
acgggcaccaagtctctgtgggatcgtggcctgctgtcaggtgcttcacagaagtcggag
aacatttgctccttccatgtgggcgagataatcatgtcgctgcagaaggcaacgctaatt
cctggaggatcggaagcccttatatacgccacgctaagtggcactgttggagcatttgtt
ccgttcaccagtcgcgaggactacgacttcttccaacatctggagatgcacatgcgcaat
gagaatcctccactctgtggacgcgaccatctcagctacaggagctcgtattatccggtc
aaaaacgtactcgacggcgatctctgcgagcagtatctgtccattgaggcagccaagcag
aagagcatagctggcgacatgttccgcactcccaatcagatctgcaagaaactggaggat
attcgcacgcgatacgccttctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   FLYBASE (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (27)   

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