KEGG   Drosophila melanogaster (fruit fly): Dmel_CG7185
Entry
Dmel_CG7185       CDS       T00030                                 
Symbol
Cpsf6
Name
(RefSeq) cleavage and polyadenylation specific factor 6, isoform A
  KO
K14398  cleavage and polyadenylation specificity factor subunit 6/7
Organism
dme  Drosophila melanogaster (fruit fly)
Pathway
dme03015  mRNA surveillance pathway
dme03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:dme00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Dmel_CG7185 (Cpsf6)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    Dmel_CG7185 (Cpsf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dme03019]
    Dmel_CG7185 (Cpsf6)
Messenger RNA biogenesis [BR:dme03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor Im (CFIm)
     Dmel_CG7185 (Cpsf6)
SSDB
Motif
Pfam: RRM_1
Other DBs
NCBI-GeneID: 38937
NCBI-ProteinID: NP_648206
FlyBase: FBgn0035872
UniProt: Q9VSH4
Position
3L
AA seq 652 aa
MADVVLDLYAEDLDKDFAGQAQDEFGGDGVDLYDDIGGPTESAASGGGGGGTPSADGAAG
PGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGVSD
LQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFE
SLQKTRPVPPPQQNGPPRGPAPPSMGGGPMPTGHPGGPQGGGPPGHPPRGMNSIMQPGQY
RPQHMSQVPQVGGPNSGPPRMQPPMHPQGGLMGNQQPPPRYPSAQGQWPGQRPGGPRPGP
PNGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFPPQGPPRGLPPAPGPGGPHGAPAP
HVNPAFFNQPGGPAQHPGMGGPPHGAPGPQPGMNMPPQQGMNMTPQHGPPPQFAQHGPRG
PWPPPQGKPPGPFPDPQQMGPQLTEVEFEEVMSRNRTVSSSAIARAVSDAAAGEYSSAIE
TLVTAISLIKQSKVAHDERCKILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRER
STSRYRERSRERERDRDRERERDGGSYRERSRSRERERQAPDHYRDDSRSVRPRKSPEPV
VAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRREEHRSRH
NT seq 1959 nt   +upstreamnt  +downstreamnt
atggccgacgtggtcttggatctgtacgcggaggacctcgacaaggactttgccgggcag
gctcaggacgaatttggaggcgatggagtagacctatacgatgacataggcggtcccacc
gaatcggccgcctcaggtggcgggggcggtggaacgccctccgcagatggagccgcaggg
ccaggctccggggaacccggcgaacggaattccggtggtcccaatggggtgtaccatcag
agcagtggtagcctcactccgaccatgaatcgccgctaccagctttatgtgggcaatctc
acatggtggaccactgaccaggatatcgccaattcgctgcgagacattggcgtgagtgat
ctacaggaagtgaagttttttgagaacagggccaacggtcagtcgaagggcttcagtgta
atctccctcggctcagaatctagcctgcgcgccgtgctcgaccagctgcccaagaaggag
atgcacggccaagcgccggtggtcacgtatcccagcaagcaggcactcacccaattcgag
agtctgcaaaagacgcgtccagtgccgccgccgcagcagaatggaccgcccaggggtccg
gcaccacccagtatgggtggcgggccaatgcccaccggacatccaggaggaccgcaagga
ggtggaccaccgggacatccaccgcgcgggatgaactccatcatgcagccgggccagtac
cgaccgcagcacatgtcgcaggttccccaggtgggcggacccaactcaggacctccacga
atgcagccgccaatgcatccgcaaggcgggctcatggggaaccaacagccgccaccccgg
tatccgtcagcgcagggccaatggccaggtcagcggccaggcgggccgcgaccaggtcca
ccgaacggaccaccgcagcgaccaatgttccaaggaggcccaatgggcatgcccgtcagg
ggtccggcaggtcccgactggcgtcgtccacccatgcacggtggtttcccgccgcaaggt
ccgccacgtggccttcccccagcaccaggtccgggcggaccacacggcgcacccgcaccc
cacgtgaacccagcattctttaaccagcctggtggtcctgcccagcatccgggcatgggt
ggcccgccccacggagcaccaggtccacagccaggcatgaatatgccaccgcaacagggc
atgaacatgacgccacagcatggaccgccaccccagttcgcccagcatggaccacgtggt
ccgtggccgccaccgcagggtaagccaccaggtcccttccccgatccgcagcagatgggt
ccgcaactgacggaggtggagttcgaggaggtgatgagcagaaatcgcacagtcagcagt
tcggcgatcgccagagctgtttctgatgcagccgctggtgaatactcgagcgccatcgag
acactggtcacagccatttcactgatcaaacagtccaaggtagcgcacgatgagcgatgc
aaaattctgattagctcgctgcaggacacgttgcatggcatcgaggccaagagctacaat
aggcgcgaaaggtcgcggtcgagggagcgatctcatcgcagccgacagcgacgtgagcgt
tccacgtccaggtaccgcgagcgatctcgggagcgggaacgcgatcgggatcgtgagcgt
gaacgggatggcggaagctacagagagaggtctcgcagtagagaacgtgaacgccaggct
ccagatcactacagggatgacagccgatcggtgcgtccacgaaagtcgccggaacccgta
gtcgccgaagcagcggaggcgccatcatcgaagcgctactacgaggatcgggaaaggtac
cgctcctcggaccgtgagcgacgcgaccgcgatcgagaccgcgaccgcgagcgggagcgt
gatcgcgacaggcgtgaggagcaccgttcccggcattga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (81)   
   KEGG ORTHOLOGY (1)   
   RefGene (76)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   FLYBASE (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (93)   

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