KEGG   Drosophila melanogaster (fruit fly): Dmel_CG8954
Entry
Dmel_CG8954       CDS       T00030                                 
Symbol
Smg5
Name
(RefSeq) Smg5 nonsense mediated mRNA decay factor, isoform C
  KO
K11125  protein SMG5
Organism
dme  Drosophila melanogaster (fruit fly)
Pathway
dme03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dme00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Dmel_CG8954 (Smg5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dme03019]
    Dmel_CG8954 (Smg5)
   03032 DNA replication proteins [BR:dme03032]
    Dmel_CG8954 (Smg5)
Messenger RNA biogenesis [BR:dme03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     Dmel_CG8954 (Smg5)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     Dmel_CG8954 (Smg5)
DNA replication proteins [BR:dme03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (animals)
    Dmel_CG8954 (Smg5)
SSDB
Motif
Pfam: EST1_DNA_bind EST1 PIN_4
Other DBs
NCBI-GeneID: 34804
NCBI-ProteinID: NP_001285914
FlyBase: FBgn0019890
UniProt: Q9V414
Position
2L
AA seq 1177 aa
MEVTFSSGGSSNASSECAIDGGTNRCRGLEPNNGTCILSQEVKDLYRSLYTASKQLDDAK
RNVQSVGQLFQHEIEEKRSLLVQLCKQIIFKDYQSVGKKVREVMWRRGYYEFIAFVKKNW
HKQCQDAATAQENMQKLERFLCAGIFNYKRLSARMEEIYDLDLKYLIDFSIISDGYISDM
IGDTMESSHSGTHAVDKSLEAVSFALDTIHSSLLSLGDLHRYFLDFRIDSKLSISKEQVA
KYYLEAFKLNPAIGMAQNQLGTLHYGQNHDLDSTYHYLYSLVCIIPFELSENNLNKLFAK
HTEYLERMDPEKLDFNIEDFFARFYLIVDIFFFDKEVPDFNALCHCVLIDLRKILCSQQL
RVPEPSIFKIVSILFFCLSKLKMINSPKVYSLHAFLVAACSDLMDACIVSIEQTILARAQ
DNERFQAEYEERFQEFDTVVRKSRNEYKNWLAAVGECERKDKKLMPRPHSLKDCSSDSRD
SQHSGEEAKTQEAADGDKIGEAVSTRSSDEAKESDLKTPLSCKSKRRGMRLRRRRRKIAQ
SDDSSCYDSESELDTDFYSDEEDYTDLSSNFDTDFSDIDAADPGEPCGEERYAAANYSKK
ERKAGGGGGGGVGGVVYSDNEDVVIEEEKIVYPNEVERRSNSQEADSEELLRSFEVLQLN
FKSAEDAQSKPVAPPPVSFSEPPKKLVYRNKYTKINPNIVIDCLHNEPTIRALKMLFDWL
RINPEILIGCYHSNPEFVHKIMKLLNYCNIDIFTRKVYFERDLLTTANVRDSLVELFDVR
ANVPLTEDFAFKNFDIFQSTQITLDWETIIRERVTPQEESILRIFKMVDFGFFICKQKKF
NYRFCVKTRRFTETQKKKQREEKKGGGSRRRERRTAPKTNRTKRNEGRTRRYSDRKNGIV
RKSYTSNEEKDTVEECRKMPRKGYLRNRNAEKAAAVITSATGTSVAGGTSASTTTNSVIE
KLNLQSSSGADEERSEAKSKKCELMGKLWLQNEVETLEEELRDSPAHVVMSPFVVVDSKA
LTEYNGIVKSLVRTKKCIVLIPNAVLNELDDLKKRSENVRHVIRWLEQEFKQGNRHLRAQ
RDNESQPLSLLKISRKMDRDASVFLQIAQFCNHLVANHADPHVSELQKSVVTYLSGDNLH
EKNRQQQNFSYTGILDSIPVRYAQIQSFYAKFKANKK
NT seq 3534 nt   +upstreamnt  +downstreamnt
atggaggtgacattcagctcgggcggatcatcgaacgcctccagcgagtgcgccatagac
ggcggcacgaatcgctgtcgcggcttggagcccaacaatggaacctgcatcctcagccag
gaggtaaaggatctttacagatccctctacaccgcctccaagcaactggacgatgccaag
aggaatgtgcagtcggtgggacagctgttccagcacgaaatcgaagagaaacgctcgctc
ctagtgcagctgtgcaagcagatcatcttcaaggactaccagtcggtgggcaagaaggtg
cgcgaggtgatgtggcgacgtggatactacgagttcattgccttcgtgaagaagaactgg
cacaagcagtgccaggatgcggccacggcccaagagaacatgcaaaagctggagcgattc
ctctgcgctggcatcttcaactacaaacgattgtcggcacgcatggaagagatctatgat
ctggatctaaagtatttgattgatttctccataatcagtgatggctacataagcgacatg
atcggagacaccatggagtcatcgcactcgggcacccacgcggtggacaagagtctggag
gccgtgtcctttgcactcgacaccatacactcatcgctgctcagtctgggcgatcttcat
cgctactttctagactttcgcatcgacagcaaactaagcataagcaaggagcaggtggcc
aagtattatctggaggccttcaagcttaatccggccattggcatggcccagaaccagttg
ggtacactgcactacggacagaatcatgacctggactccacttaccactacttgtactcc
cttgtgtgcatcataccattcgaactaagcgaaaataatcttaacaagctgttcgccaag
cacaccgaatacctagagcgtatggatccagaaaaactagacttcaacatcgaggacttc
tttgcccgtttctatctgattgtggacatatttttcttcgacaaggaagtgccggacttt
aacgctctgtgccactgtgtgctgattgatctacgcaagatcctgtgctcccagcagctg
cgcgttccggagccaagcatcttcaagattgtctccattctgttcttctgtctgtccaag
cttaagatgatcaactcaccaaaggtttactcgctgcacgcctttctggttgctgcctgt
tccgatctgatggacgcctgcatcgtcagcatcgagcagacaatcctggctcgcgcccaa
gacaacgagcgcttccaggcggagtacgaggaacgctttcaggagttcgatactgtggtg
cgcaagtcccggaatgagtacaagaactggctagctgcagtaggcgaatgtgagcgcaag
gacaagaagttgatgccacgcccgcactctctaaaggattgcagttcggattcgcgggac
agccagcactctggcgaggaggcaaagacccaggaggctgctgacggcgacaagatcggt
gaggccgtttccacgcgctccagtgacgaggccaaggagtccgaccttaagaccccgctc
tcctgcaagagcaagcgacggggaatgcgtctacgccgccgacgccgcaagatcgcccag
tcggacgacagctcctgctatgacagcgaaagcgaactggacacagacttttacagcgac
gaggaggattacacagatctaagttctaactttgacaccgatttcagcgacattgatgca
gctgatcctggggagccatgcggcgaagagcgctatgcagcagctaattacagcaaaaag
gagcgcaaagctggcggcggcggcggaggaggagtcggtggcgtggtgtactccgacaac
gaagacgttgttattgaggaggagaaaatcgtgtatcccaacgaagtagagcgcagatcc
aactcacaggaggcggactctgaggagttgctgcgcagctttgaggtactgcagctgaac
tttaagagcgcagaggatgctcaaagcaagccggtggcacctccgcccgtcagcttttca
gagccaccaaagaagctggtttatcgcaacaagtacaccaagatcaatcccaacatagtc
attgactgtctgcacaatgaaccgaccattagagccctgaaaatgctttttgactggctg
cgaatcaacccagagattctcatcggctgctaccactcgaatccggagtttgtgcacaag
atcatgaagcttctcaactactgcaacatcgacatcttcaccaggaaggtttacttcgag
cgcgaccttctgaccactgccaacgtgcgtgattctctggtcgagttattcgatgtgcgc
gccaacgttccgctcaccgaggactttgctttcaagaactttgacatcttccagagcacc
cagattacactggactgggagaccattatccgggagcgtgtcactccccaggaagagtcc
attctccgtattttcaaaatggtcgactttggctttttcatttgcaagcagaagaagttt
aactacagattctgcgtcaagacgcgtcgtttcaccgagacccaaaagaagaaacagcgc
gaggagaagaagggaggcggatcacgtcgccgcgagcgtcgtaccgctccgaagaccaac
cgaacaaagcggaacgaaggacgcacacgtcgctactccgatcgcaagaacggcatcgtc
cgcaagagctacaccagtaacgaggaaaaggacaccgtggaggagtgccgcaagatgcca
cgcaagggttacctaaggaatcgcaatgccgagaaggcggctgctgttataaccagtgcc
acgggaacctctgtcgccggcggaacctccgcctccacaaccacaaacagtgtcatcgag
aaactgaatttgcagtccagctcgggggccgacgaagagcgctcggaggccaagtcgaag
aagtgtgagctcatgggcaagctgtggctgcaaaacgaggtggagactttggaggaggag
ctgcgggacagtcccgctcatgtggtgatgtccccatttgtggtggtcgattcgaaggca
ttgaccgaatacaatggcatagtcaagtcgctggtgaggaccaagaagtgcattgtcctc
attccaaatgcagtgctcaatgagttggatgacttgaagaaacgcagcgagaatgtgcgc
catgtcatccgttggctggagcaggagtttaaacagggcaataggcacttgcgtgcccag
cgcgataacgaaagtcagccgctatccctgctgaagatatcacgcaagatggatcgtgac
gcctcagttttccttcaaattgcccagttctgcaatcacttggtggccaaccatgccgat
ccgcacgtcagcgaactgcagaagagcgtcgtcacgtacttgtccggcgataatttgcac
gagaagaaccgccagcaacagaacttcagctacaccggcatccttgactcgatacccgta
cgctatgcccaaatccagagcttctacgcaaaatttaaggccaacaaaaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   FLYBASE (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (48)   

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