KEGG   Drosophila melanogaster (fruit fly): Dmel_CG9936
Entry
Dmel_CG9936       CDS       T00030                                 
Symbol
skd
Name
(RefSeq) skuld, isoform D
  KO
K15164  mediator of RNA polymerase II transcription subunit 13
Organism
dme  Drosophila melanogaster (fruit fly)
Brite
KEGG Orthology (KO) [BR:dme00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dme03021]
    Dmel_CG9936 (skd)
Transcription machinery [BR:dme03021]
 Eukaryotic type
  RNA polymerase II system
   Mediator complex
    CDK-module
     Dmel_CG9936 (skd)
SSDB
Motif
Pfam: Med13_C MID_MedPIWI Med13_N
Other DBs
NCBI-GeneID: 43906
NCBI-ProteinID: NP_524653
FlyBase: FBgn0003415
UniProt: Q7KTX8 E6PBY1
Position
3L
AA seq 2618 aa
MTHQNHQTNGASLEDCHTNFYALTDLCGIKWRKFVNGERPNASSDPLADPILRSYSRCIQ
ADMLCVWRRVQSTKTDHADPNALTFEMTTSTKVHPPLSLAAAKELWIFWYGEEPDLSELV
DAELLRVAANQALWNGTWKGALTYECRSLLFKALHNLMERFVLTKDIVRFGKWFVQPCTS
SDRLFGRSSQHLSFSFTFFVHGDTVCASIDLREHPAVRPLTKEHLTEAAAAFAAASSPPG
SNGSAASAGGAVPNPGQDPNGASMDGLDGGEGAAKAAPPPHARKVMLAPFGIAGILTGNS
YKASDPIAEKILEDWASFFPLCNKDNTDVPPVVEVVSGGHKMYHPTNYVLVTDLDDMEHM
EFVEMQKMQSSVAGAAAESAVLASLSCPPGAASAPSSMGAAPSATAVPLGPASLNAPALA
GAGVGATASSAAKEISRKAAPQAVSALERLAFQPYYDQRPTSGFTFNTNNTHIPASAAVE
MPERTWQDCVMNTLHVDAAAAAAAVASSTPASGTGSLSADGDENEQNKPPQDSKQLVQQQ
IQQQQQRQKLWNFVDPMQKAPCICTKHLGNTPHGTPHGGASTYSRNSLGGDSSMPVASVE
SPATPAPSPHPNSAHSQPTSVPPAEQLLNMSPHAPTSVSNLQQPPTPIDHLLDKNTPAPT
PTDQHDSKSITASPYVHQTPSVEPPSYTDHAAGGGPAGGQGLGTGPGSVPAQQPATPTAA
TSAGGAGSGGPSNAIGANAVGTISVKKLEMQQQTPSAAMAIKQEPGAQGRGVGGVTSTTE
ALNNFKRLYNPPKLTLKDPDSFYDEEWLKEVIYDFQYQEYWDYSTVKRPKMEKQRRPRYA
KNLYEGQNHVKPVMPSPGSVYGSQLLSLDESASQAGGRGGGGQAAGSSGGGLVGIANSTA
SGSDVEADGSSFFQGLNIKTEPGLHSPSCKETSKSSGGNSSGGGSGSGGNLFTAEGLNPS
LNDLEQLFETSSNDECSSVQIHTPPDSNNPSNGGCSAVTNTIEDLKRSTAVASAAVAAAA
AAAASGAGNIQAEDLTKMFPTPPSHEQQHPNSSPCQTDVVMTDLSVDTTTTIITSSITTT
CNTTITSSINTTTTACSNPSNSIMLAAAQAPVTVVAIQTVSKMVKQEYNLELGSPMEEPI
NDWDYVYRPPQQEKFVGSTRYAPLTNLPSQTQPPLTLPTGCFYQPTWSSHKSRAATLAKA
AAAQQQQHQKHQALQQRIQLHQQKLQQLQLQNQQQQQAAAAAAAAASGGVGHQKHQHQHL
HDLLSAAPRTPLTPSTVPQPLSSGGSQYLLNQLNCPQAPPGASMQQLMHRAGMSPISPGP
GMGPYAARSSPMSRATPTHPPPPYPYDLAVASPATSTSSYLNRPLHSQEHPHMHGLGGGA
TGVVGHGTGGGGHMGMVAYTGDAGIVSGGTAMAAGSSSLLQELPEVNSVLVNILLYDTAL
NVFRDHNFDSSSVCVCNADTQKIGNIRGADSGVYVPLPGVSFNPFPSGAGGALAGQRMLN
GPSSAGFGGMRMISAFGGSPASASMPGAGSGHGHGPNGGSNSSSCTPPSSNPHITGYVDD
DPVECTCGFSAVVNRRLSHRAGLFYEDEVEITGIADDPGRNKQPTLLSIIQSLSRKNQNK
QGPGETSSALDKIGAGGLPNGQLEQLGHAVFDLLLDQCSIIQTSSSSVHRALQSHRRRMS
RQRRIFGNNGAPTASLASIANVLEFMDAHDVISLALEQSRLAFENQRMDNMMDFHGNGSS
SSHQQQQLTAFHAPPPALRHKLAGIGAGRLTVHKWPYLPVGFTRSNKEIVRTMNAIQPML
QNAFHCKSRGGSGSKDASSYNTVSGPLTWRQFHRLAGRASGQCEPQPIPSVVVGYEKDWI
SVAPHSIHYWDKFLLEPYSYARDVVYVVVCPDNEHVVNCTRSYFRELSSTYEMCKLGKHT
PIRGWDGFLQVGAARNNVPADRETTPLDDWLRTLEHAALAEQIRRYAVAFIHQLAPYLSR
VPNDKTLLNPPDGSGNSHSKGGSSCSSNSSSVSGLPGGDLPTDNIKLEPGTEPQVQPMET
NEIKQEPGVGKGGTAAGETKPTLILGDPLGMGETLEDINPSAIVLYVVNPFTFASDSCEL
ERLALIALLRCYAELLKAVPDSVRSQMNIQIISLESVMELGPCGNRKRFSDEIRCLALNI
FSQCRRHLVHAQSVKSLTGFGTAANMEAFLKTKDEPNRRAYKMYTAPFVLAPMHERNDKT
DFSRSAGSMHGQNEHRYSVMYCNYCLSEDQAWLLATATDERGEMLEKICINIDVPNRARR
RKAPARYVALKKLMDFIMGIISQTSQMWRLVIGRIGRIGHSELKSWSFLLSKQQLQKASK
QFKDMCKQCTLMYPPTILSACLVTLEPDAKLRVMPDQFTPDERFSQISMQNPLATPQDVT
CTHILVFPTSAVCAPFTRQFQNEPQVDDDFLTFEEEGNEDFSDADIGDLFWDTHMDRVSN
HGSPGRMDDNRSWQSAGGNNFKCTPPQEVEEVGSLNQQPISVGYMVSTAPTGRMPAWFWS
ACPHLEDVCPVFLKTALHLHVPSIQSADDILNSTNAHQSGNDHPLDSNLTADVLRFVLEG
YNALSWLALDSNTHDRLSCLPINVQTLMDLYYLTAAIA
NT seq 7857 nt   +upstreamnt  +downstreamnt
atgacgcatcaaaatcatcagacaaacggcgcaagtttggaggattgccacacaaacttt
tatgccttgactgatttatgtggaataaagtggcggaagttcgttaacggggagcgaccg
aacgcatcgagcgatcctttggcggacccgatcctgcgctcatattcgcgatgcatccag
gcggacatgctgtgcgtgtggaggagggtccaatccacgaagacggaccacgccgacccg
aatgccttaaccttcgagatgaccacgtcgaccaaggtccacccgcccctttcgctggcc
gccgccaaggagctatggatcttctggtacggcgaggagcccgatctcagtgaactggtc
gatgccgagctgctccgagtagcggccaaccaagcgctttggaatggcacctggaaagga
gctctcacctacgagtgccggtcgctgctctttaaggcgctgcacaatctcatggagaga
ttcgtgcttaccaaggacattgtgcgctttggaaaatggtttgtgcagccctgcacctcc
agcgatcgcctctttggacgcagctcccagcacttgtccttctcatttacgttctttgtg
cacggcgacaccgtttgtgcctccatagatttgcgcgagcatcccgccgtgcgtccgctg
accaaggagcacttgaccgaagcggcggcagcctttgcagcggccagttctccgccagga
tcaaatggatctgcggcgtcagcagggggagctgtgcctaatcctggtcaggatccaaat
ggagccagcatggatggactggacggcggagagggagcggccaaggcagcgccacctccg
cacgcgcgaaaggttatgctggcgccctttggaattgctggcatacttaccggcaatagc
tataaggccagcgatcccatagccgagaagatccttgaggattgggcctcgttttttccg
ctgtgcaataaggataacacggatgtgccacccgtggtggaagtggtgtcgggtggtcat
aagatgtatcatcccacgaactacgtactagtcacagacctggacgacatggagcacatg
gaattcgtcgagatgcagaagatgcaaagctcagtggccggagcggcggccgagtcagct
gttctggcctcgctttcctgcccaccgggagcagcatctgctccttcatcgatgggagca
gctccatctgcaacagcggttcccttgggtccagcttccctcaatgcgccagctttagca
ggagcaggtgtcggagccaccgcatcttccgccgccaaagagatatcccgcaaggcagct
ccacaagcggttagcgccctggaacgtctcgccttccagccctactacgatcaacggccc
acctcgggcttcaccttcaataccaacaatactcacatacccgcctcggcagccgtggaa
atgccggaacgaacctggcaggattgcgtgatgaacacgctccatgtggatgcagcggcg
gcggcagcagcagttgcttcgtctacgcccgcctcgggaactgggtcattatccgcggat
ggggacgagaatgagcagaataaaccgccacaggactccaagcaactggtgcagcagcag
atccagcagcaacagcaacgccaaaagctctggaactttgtggatcccatgcaaaaggca
ccctgcatatgcaccaaacatctgggaaacacacctcatggaacaccacacggcggcgct
tcaacgtactcccgcaactccttgggcggcgattcctcgatgccggtggcctccgtggaa
tcaccggcaacgccggctccctctccgcatccgaattcggcgcactcgcaaccgacatcc
gtgccgcccgctgagcaactgctcaatatgagtcctcatgcgccaacttccgtttccaat
ctccaacagccgccgacgcctatcgaccacctgctggacaagaatacaccggcgccaacg
ccaacggaccagcacgacagcaagagcattacggcctcgccctatgttcatcagacgcca
agcgtggagccgccctcgtatacggatcatgcggccggcggagggccagctggtgggcag
ggccttggtacgggtccaggtagtgtgcccgcccagcaaccggctacgcccacagcagca
acgtcagctggtggcgccggatctggcggaccttcaaatgcaattggagcaaatgcggtt
ggtactataagtgtcaagaagcttgagatgcagcagcagactccatcggcagctatggcc
atcaagcaggagcctggtgctcaaggtcggggggttggaggtgttacctccaccacggag
gccttgaacaactttaagcgactgtacaacccgccaaagctgacgttaaaggatccggac
agcttctacgacgaggagtggctcaaggaggtcatctatgactttcagtaccaggaatac
tgggactatagcacggtgaaacgtccgaagatggaaaagcaacggagacctaggtatgcc
aagaacctttacgaaggacaaaaccacgtgaagcccgtgatgccttcgccaggatccgtt
tatggctcacagttgctttccttggatgagtcagcgagccaagcaggagggagaggcggt
ggaggacaggcggcgggcagctccggcggtggtctagtgggcattgccaacagtactgcc
agtggcagtgatgtagaagctgatggtagcagcttcttccagggactgaacattaagaca
gagcctggattgcattccccttcttgcaaggaaacgtcgaaatcctcgggcggcaacagc
agcggtggaggaagtggtagcggtggtaatctcttcacagctgaaggcttgaatccctcg
ctcaacgatctggagcagttgtttgagacaagctcgaacgacgagtgcagcagtgtgcaa
atccacacgccacccgattctaacaacccctcgaatggcggctgcagtgctgtgaccaat
acgatcgaagacctcaaacggagcacagcggtggccagtgctgccgtagcagcggcagca
gcagctgcggcctcgggcgcgggcaatatccaggcggaggatcttaccaagatgtttccc
acaccaccgtctcacgagcagcagcacccgaactcgagtccctgtcaaacggacgtggtt
atgacggatctcagtgtggacaccaccacaaccattataaccagtagtatcaccactact
tgcaataccactatcacgagtagtatcaacaccaccacaacagcctgtagcaacccaagc
aacagtattatgctggctgccgcacaagctcccgtcaccgtggtggccatccagactgtc
tccaaaatggtaaagcaggagtataacctggagctgggtagtcctatggaagagcccatt
aatgactgggattatgtgtaccgacctccgcaacaggagaagtttgtgggctcgacgcga
tatgctccattgaccaacctgcccagtcagacacagccgccgctgactctgcctacggga
tgcttttatcaacccacctggagtagtcacaaatcaagagcagcaactttggctaaagca
gcggcagctcaacagcagcagcatcagaaacatcaggcccttcagcagcgcatccaattg
catcagcagaaactacagcagctccagcttcagaatcagcagcaacaacaagcggcagcc
gcagcagcagcggcggctagtggaggagttggccaccagaagcaccagcatcagcacctt
catgatctcctgtcagcggcgccgaggacaccattaacgccctctactgttccgcaaccg
ttgagcagtggtggcagtcagtatttgctgaatcagttgaactgcccacaagcgccacct
ggtgcctccatgcagcagctaatgcaccgagcggggatgtcaccaatttcaccgggaccc
ggaatgggtccgtatgccgccagaagtagtccaatgtcgagggcaacccccacgcatccg
ccaccgccatatccgtatgacttggctgtggccagtccagctacctccacatcatcgtac
ttgaaccggccgcttcactcgcaagagcatccgcacatgcatggcttgggcggcggagca
acgggagttgtgggtcacggaacaggaggtggcgggcacatgggtatggtagcgtacact
ggcgatgcgggcattgtcagtggtggaacagcgatggcagccggatcctcgtccttgctt
caggaattaccagaagtaaattctgtcctagttaacatcctgctgtacgataccgccttg
aatgtcttccgggatcacaactttgatagtagcagtgtgtgtgtgtgcaatgcggatacg
caaaagattggcaatattcgcggagcggattccggagtatatgtacccctgcccggggtt
agcttcaatcctttcccttccggagctggaggcgctttggctggacagcgaatgctcaat
ggacccagttccgccggttttggcggcatgcggatgatcagtgcctttgggggttcgcca
gcctcagcctcgatgcccggagctggctccggacatggccatggtccaaatggtggctcc
aactcgtcgtcttgcacgccgcccagcagtaatccccatatcaccgggtatgtggacgat
gatcccgtggagtgtacgtgtggtttcagtgcagtggttaatcgaagactctctcatcgc
gctggactcttttacgaagatgaggtggagatcacgggcatcgcggatgatccgggcagg
aataagcagcccacgttgctcagtatcatccagagtcttagcaggaaaaaccaaaacaag
cagggacctggagaaacaagctctgcattggataaaattggagcgggaggattgcctaat
ggacaactggagcaattgggtcatgctgtatttgacctgctattggatcagtgctctatc
atccaaacatctagcagttcggtgcacagagcacttcagtctcatcggaggcgaatgtcc
cgccaacgaaggatcttcggtaacaatggagctcccactgcctcattggcatcaattgca
aatgttctagagtttatggatgcacacgacgttataagtttggccctggagcagtcgaga
ttggcattcgaaaaccagcggatggacaacatgatggacttccatgggaatggtagcagt
agctcgcatcagcagcagcaactgacagctttccatgcgccaccacctgctttgcgtcac
aagctagcaggtattggtgctgggcggttgacggttcacaagtggccatatcttcccgtc
ggtttcacccgtagcaataaggagattgtacgcaccatgaatgctatacagccgatgctg
cagaatgcattccattgcaaatccaggggcggctcaggttccaaggatgccagttcgtac
aatacggtgagtggaccgctaacctggcgccaattccatcgactggcaggccgtgcatcc
ggacaatgtgagccgcaaccgataccatccgtggtggtgggctacgagaaggattggatc
tcggtggcaccgcactccatccactattgggataagtttctcctggaaccgtactcctat
gccagggatgttgtatacgtggtagtgtgtccggacaacgagcatgtggtaaattgtact
cgcagctatttccgggaactaagcagcacctacgagatgtgcaagctgggcaaacacaca
cccatccgaggatgggatggtttccttcaagtaggcgctgctcgcaacaacgtgcctgcg
gatcgggaaacaactcccttggatgattggctgcgtaccctggaacatgctgctctggcg
gagcaaatccgtcggtatgcagttgcctttattcaccagttggctccatacctaagtcga
gtgccaaatgataaaacgctgttgaatccaccagatggcagtggcaactcacactctaaa
ggaggaagctcttgctcctcgaatagctcttcagtcagcggattgccaggcggggactta
cccacggataatataaagctggagccaggtacagaaccacaagtccaaccgatggagact
aacgaaataaaacaggaacccggagtgggaaaaggaggcactgcagcaggtgaaaccaaa
ccaactctgatcctcggagatccgttgggaatgggcgagactttggaggacatcaacccg
tcagccattgtcctttatgtggtcaatccgttcactttcgcctcggatagctgcgagctg
gagcgtctagctctgattgctctacttcgttgctatgcggaactgctgaaagcagtccca
gattcagtgcgatcccagatgaacatacagattatatcgctagaatcggtaatggaactg
ggtccgtgcggcaatcgaaagcgtttctcggacgagattaggtgcctggctctaaacata
ttttcgcagtgccggcgacatctggtgcatgcccaatccgttaaaagtcttactggcttt
ggtacggcggctaatatggaggcgtttctcaagacaaaggatgaacccaatcgccgggcc
tacaagatgtacacggctccctttgttctggcaccaatgcacgagaggaatgacaaaacg
gacttctccagatcagcgggaagtatgcatggccagaatgaacatcgttattcggttatg
tattgcaattactgcctaagtgaggatcaggcttggcttttggccaccgccactgatgaa
aggggcgagatgctggagaagatctgcattaatattgatgtgccaaatcgtgctcggagg
agaaaagcccctgctcgctatgtggccctaaagaaactgatggacttcatcatgggaatc
atctcgcagacatcgcaaatgtggcgtttggttatcggacgcattggaaggatcggacac
agtgaactgaagtcgtggagttttttgctcagcaagcaacagctgcaaaaggcatccaag
caatttaaggatatgtgtaagcaatgtacattgatgtatccacccacgatcctgagtgct
tgccttgtgaccttggagccggatgccaagctgcgcgtgatgcccgaccagtttacgcca
gatgagcgcttctcacagatttccatgcagaacccgttggccactccacaggacgtgacc
tgcacccacatcctggtctttcccactagcgccgtctgtgcgccttttacgcgccagttc
caaaacgagccgcaagtagatgacgactttctaacattcgaggaagagggcaacgaggac
ttcagcgatgcggacattggagatctcttctgggacactcatatggacagagtatccaat
catggtagtcccggtcgcatggatgacaatcggagttggcagagcgctggcggtaataat
ttcaagtgcacgccgccccaggaagtagaggaggttggttcactcaaccagcagcccata
tcagtgggttacatggtgtccacggcgccaaccggtcgcatgcctgcttggttctggtcc
gcctgtccgcatctagaagacgtttgtccggtgtttctgaagacagccctccatctccat
gtgcccagcatacagtctgccgacgatattctcaactcgaccaatgcccatcagtcaggc
aacgatcatccgcttgactccaatctcacagcggatgtgctgcgcttcgtcctcgaggga
tacaatgccctttcctggctggcgctcgactccaacacacacgatcgtctctcctgtctg
cccatcaatgtccagacgctaatggatctgtactatctgacggctgcaatagcctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (87)   
   KEGG ORTHOLOGY (1)   
   RefGene (82)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   FLYBASE (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (3)   
   Pfam (3)   
All databases (104)   

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