KEGG   Dokdonia sp. MED134: MED134_01180
Entry
MED134_01180      CDS       T03275                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
dok  Dokdonia sp. MED134
Brite
KEGG Orthology (KO) [BR:dok00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dok03032]
    MED134_01180 (topA)
   03400 DNA repair and recombination proteins [BR:dok03400]
    MED134_01180 (topA)
Enzymes [BR:dok01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     MED134_01180 (topA)
DNA replication proteins [BR:dok03032]
 Prokaryotic type
  DNA Topoisomerases
   MED134_01180 (topA)
DNA repair and recombination proteins [BR:dok03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      MED134_01180 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim
Other DBs
NCBI-ProteinID: EAQ39189
Position
complement(1365171..1367711)
AA seq 846 aa
MAKNLVIVESPAKAKTIEKFLGSDYKVESSFGHIADLPSKELGVDVDGDFTPKYKVSDDK
KKVVRNLKSLANKAEMVWLASDEDREGEAIAWHLEQELGLTPDRTKRIVFHEITKTAILR
AIENPRKIDYDLVNAQQARRVLDRLVGYELSPVLWRKVKGGLSAGRVQSVSVRLIVERER
EVLGFEPKASYRVDAEFTTQDGKSFKAKLPKNITTKKEAKAFLEKNLSATFKVDALTKKP
AKKSPAPPFTTSTLQQEASRKLYFSVSKTMTMAQRLYEAGHITYMRTDSVNLSKDAKAGA
EAEIVAAYGKEFHKERNYKGKSKGAQEAHEAIRPTDFSKHSVNMDRDQIRLYELIWKRAI
ASQMSEAQLERTNVQIASSAGTDNFTANGEILKFEGFLKVYLEGSDDEDVEETGLLPDLK
TGEALLNKYITATERFTRPPYRYTEASLVKKLEELGIGRPSTYAPTITTIQNRKYVEKGT
VEGKERSYDVLSLENNEIKDRTLTETVGSDKGKLVPTDVGMVVNDFLVQHFENILDYNFT
AKVEADFDDIAEGKQEWTKMMKDFYKDFHPHVKDVEKNAEREVGERILGKDPETGKPVSV
RLGKFGPMVQIGSVEDDEKPRFASLGPDQTLSNLTYEQAMDLFKLPKDLGTFEEEEVSVN
NGRFGPYVKFGKTFVSLPKGRDPMDVDLDEAIVYIKEKQKADAPIYMYEDLPVQKGTGRF
GPYIKWNGMFINVNKKYDFDNLSDEDIVELIEVKKQKEIDKVLQDFPEEGIRVEKARWGR
SNIIKGKLKIELSKDIDAAALSLDEIKDYIEKKAPKKKAPKKKAAKKKAPAKKKAPAKKK
TTAKKK
NT seq 2541 nt   +upstreamnt  +downstreamnt
atggcaaagaatctcgtcattgtggagtcacctgcaaaggctaaaacgatagaaaaattt
ctaggctcagactataaagttgagagtagttttggacacattgcagaccttccctctaag
gagttaggtgttgatgtagatggagattttactccaaaatataaagtctcagacgataag
aaaaaggtggtgagaaaccttaagtctcttgcaaataaggcagagatggtgtggctcgct
agtgatgaggatcgcgagggagaggctatagcctggcacttagaacaagagcttgggtta
acaccagaccgtacaaaacgtattgtttttcacgagattacaaagacggctatactaaga
gctattgagaaccctcgtaagattgattatgatcttgtaaatgcacaacaagcgcgtaga
gtgcttgatagattagtggggtatgagctctctccagtattatggagaaaggtaaaagga
ggtctttcggcggggcgtgtgcaatctgtttctgtaagacttattgtagagcgtgagcgt
gaggttttaggttttgagcctaaagcatcatatagagtagatgcagagtttactacgcaa
gatggaaagtcttttaaagcaaaacttcctaaaaatataactaccaaaaaagaggcgaag
gcttttcttgagaaaaaccttagtgctacttttaaagtagatgcgcttactaagaagcca
gcaaaaaaatcaccagcaccaccatttactacctctactttacaacaggaagcaagtaga
aaactgtatttctctgtaagtaaaacgatgacgatggcacagcgactctatgaagctggg
catattacatatatgagaacagatagtgtaaatctatctaaagatgcaaaggctggagca
gaggcagagattgtagctgcttatggtaaggagtttcataaagaacgtaattataaagga
aagtctaagggagcacaagaagctcacgaggcgatacgtcctacagatttctcaaagcat
tctgtaaatatggatcgcgaccagatacgtctttatgaacttatctggaaacgtgcgatt
gcctcacaaatgagcgaggcacaactagagcgcacaaatgtgcaaatagcttctagtgca
ggtacagataattttacagcaaatggggagatcttaaagtttgaaggtttcttaaaagta
tacctagaaggtagtgatgatgaagatgtagaagaaacaggtttacttcctgatcttaaa
acaggagaggcgctacttaataaatacattaccgccacagaacgttttacaagaccacca
taccgttatacagaagcttctctagtaaagaaacttgaagaactaggtataggacgtcca
tctacatatgcacctactattacgactatccaaaatcgtaagtatgtagaaaaaggtact
gtagaagggaaggagcgatcttatgatgtgcttagtcttgaaaataacgagataaaagat
agaactcttacagaaactgtagggtcagataaaggaaagcttgttcctacagatgtaggg
atggtcgtaaacgactttttagtccagcattttgaaaacattcttgattataactttact
gcaaaggtcgaagcagattttgacgacatagcagaaggaaagcaggagtggactaaaatg
atgaaggatttctataaagacttccatcctcacgtaaaagatgtagaaaaaaatgcagag
cgtgaagtaggagagcgcatactaggtaaagatccagaaacaggtaagcctgtgagtgtg
cgtctaggtaaatttggtcctatggttcagataggttctgtagaggatgatgagaagcct
cgatttgcaagtctaggtccagatcaaacgcttagtaaccttacgtatgagcaggcaatg
gacctctttaaactacctaaagatttaggaacttttgaagaagaagaggtgtctgtaaat
aatggtcgttttggaccgtatgttaagtttggaaaaacatttgtatcactacctaaagga
cgtgatccaatggatgtagatctagatgaagctatagtgtacatcaaagaaaaacaaaag
gcagacgctcctatatatatgtatgaggatcttccggttcaaaaaggtacaggtcgtttt
ggcccgtatataaaatggaacggaatgtttataaacgtaaacaagaagtacgattttgat
aacctctctgatgaggatattgtagagcttatagaagttaaaaagcaaaaggaaatagat
aaagtacttcaggattttccagaagaaggaatacgtgtagaaaaagcacgctggggacgc
tctaatattataaaaggtaagctcaaaatagagcttagtaaagatatagatgctgctgct
ttaagtcttgatgagataaaagactacatcgagaagaaagctccaaaaaagaaagctcca
aaaaagaaggctgccaaaaagaaggcgccagcaaaaaagaaagctccggctaagaaaaaa
accacagcaaaaaagaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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