KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os02t0617700-01
Entry
Os02t0617700-01   CDS       T02163                                 
Symbol
Os02g0617700
Name
(RAP-DB) Nucleic acid-binding, OB-fold domain containing protein.
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Os02t0617700-01 (Os02g0617700)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os02t0617700-01 (Os02g0617700)
   03016 Transfer RNA biogenesis [BR:dosa03016]
    Os02t0617700-01 (Os02g0617700)
Enzymes [BR:dosa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Os02t0617700-01 (Os02g0617700)
Messenger RNA biogenesis [BR:dosa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Os02t0617700-01 (Os02g0617700)
Transfer RNA biogenesis [BR:dosa03016]
 Prokaryotic type
  tRNA degradation factors
   Os02t0617700-01 (Os02g0617700)
SSDB
Motif
Pfam: S1 S1_2
Other DBs
RAP-DB: Os02t0617700-01
Position
chr02:complement(join(24533592..24533642,24533262..24533405,24531945..24532619,24531531..24531629))
AA seq 322 aa
VTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKGVVSSIKEYGAFVEFNGGQQGLLHISE
LSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKATLPHAHEKKDLASNHTDPLPSQ
EVVGWTAVENMPSKDANAEPSISKDEDNMIEETPGCSTPAVIIRSAAECDAQDVTNDPKK
KRPKVAKSSPKLSKPASERQEVKRTSAKKTSGASTTAKKNKKEKADSSNDVLDAIPEQNK
SNIMNYSSPSNFRSGSMKLGDVVTAKVYQIRAYGLVLELSDGVRGMHKFAENGHKDFEVG
EELLVKCSSFNAKGIPVFSLLD
NT seq 969 nt   +upstreamnt  +downstreamnt
gtcactattgtagcaaaaacccaaccaattatggataaggctatcgagaaggtagaattt
cttgtgggtcgtgaaattgaagttggcagaacgtacaaaggtgttgtttcctcaataaag
gagtacggtgcttttgtggaattcaatggtggacagcaaggtctacttcatatttctgag
ttgtcacatgataaggtgtctaaggtctcggatgttgtatctgttggccaagtgctctca
ttgacatgcattggacaggacttgaggggtaacattaaactttctcttaaagctaccctg
ccccatgcccatgaaaagaaggatttagcaagtaatcatactgatcctttgccaagtcaa
gaagttgttggctggacggctgtagagaacatgcctagcaaggatgctaatgctgaacca
tccatcagcaaagacgaagacaacatgattgaggagacacctgggtgttctactcctgca
gttataattcgaagtgctgctgaatgtgatgcgcaagatgttacaaatgatcctaagaag
aaacgcccaaaggttgcaaagtcatctcctaagctatctaaaccagccagcgaaaggcag
gaagttaagagaactagtgctaagaaaacttcaggtgcatcaacaacggccaagaaaaat
aagaaagaaaaagctgactcttcaaatgatgtgctggatgccattccagaacaaaataaa
agtaacatcatgaactattctagtccctcaaacttcaggtctgggtctatgaagctgggt
gacgtagttacagcaaaggtctaccagatacgagcctatggattagtacttgagttgagt
gatggagttcgtggaatgcataaatttgcggaaaatggacacaaggattttgaggtcgga
gaagaactacttgtgaaatgctcaagtttcaatgcaaagggaattccggtcttctcattg
ctagattag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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