KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os03t0652100-01
Entry
Os03t0652100-01   CDS       T02163                                 
Symbol
Os03g0652100
Name
(RAP-DB) Not CCR4-Not complex component, N-terminal domain containing protein.
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Os03t0652100-01 (Os03g0652100)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os03t0652100-01 (Os03g0652100)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Os03t0652100-01 (Os03g0652100)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     Os03t0652100-01 (Os03g0652100)
SSDB
Motif
Pfam: Not3 NOT2_3_5_C Peptidase_M9_N DUF4407 DUF5965 DUF5646
Other DBs
RAP-DB: Os03t0652100-01
Position
chr03:join(25334401..25334491,25334665..25334798,25336702..25336818,25338278..25338328,25338749..25338838,25338941..25339087,25339195..25339305,25339394..25339462,25339864..25340604,25340927..25341091,25341463..25341529,25341667..25341791,25343801..25344070,25344152..25344286,25344403..25344584,25344756..25344831)
AA seq 856 aa
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPKTDPKEKA
KAETRDWLNNVVSDLENQIDNFEAEVEGLSIKKGKQRPPRLVHLEKSITRHKAHIKKLES
ILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVEELYSTLPMEKVEALEDMVSL
APSSLVKGVASVSTTAVLSTKSSVATSPTQATVSAAPSLSVSQDQAEETASQESNPESAP
QTPPSKVGSQPSVPVVPTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPASVTARSAP
ENIPAVTSAPANSSSTLKDDDNMSFPSRRSSPAVTEIGLGRGITRGLTSQGLGSAPISIG
PVSGNGSVSALTDLSKRNMLNTDERINSGGISQQLISPLGNKAQPQQVLRTTDTISSDSS
NTNESTVLGGRIFSPPVVSGVQWRPQNTAGLQNQSEAGQFCGRPEISADQREKYLQRLQQ
VQQQGSLLNVSHITGISQKQFPSQQPNPLLQQFNSQSSSISSQAGIGLGQVQVPESGHTK
SEEQQQSFAEDVSVESVATAGANKHMSEDDTKIPFSNPSASITEGTQLSRDPDLPAGQPL
QPGMSSSGVGVIGRRSVSDLGAIGDNLSVASASTSHDLLYNLQMLEAAFHRLPQPKDSER
VKNYIPKHPAVTPASFPQIQAPVVSNPAFWERMGGDSLSTDLLFFAFYYQQNTYQQFLSA
RELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSYVYFDFHVIDDGTGSGWCQRIKNDF
TFEYNFLEDELSVQTN
NT seq 2571 nt   +upstreamnt  +downstreamnt
atgggcgccagccggaagctgcagggcgagatcgaccgcgtcctcaagaaggtccaggag
ggcgtcgacgtcttcgacagcatctggaacaaggtctacgacaccgagaatgcgaaccag
aaggagaagttcgaggccgacctcaagaaggagatcaagaagctgcagcggtacagggac
cagatcaagacgtggatccagtccagcgagatcaaggacaagaaggctcttatggatgcc
cgaaagcagattgaacgcgagatggaacgatttaaggtttgtgagaaggaaactaaaacg
aaggccttttccaaggaagggttaggtcaacaaccgaaaactgatccaaaagagaaggca
aaagctgaaacaagagattggcttaacaatgtggttagtgatttggaaaaccaaatcgat
aacttcgaagctgaggttgaaggactttcaattaagaaaggaaagcaaagacctcctcga
ttggtacatttagagaaatctatcacacggcataaagctcacataaagaaattggagtca
atattaagacttttggataatgatgagttgagtcctgagcaagttaatgatgtgaaagat
ttcctggatgactatgttgaacgtaaccaggaagattttgatgaatttagtgatgtggaa
gagctctatagcacattacctatggagaaggttgaagcactagaagacatggtttcactt
gccccttccagtcttgtcaagggtgttgcttctgtttctactactgcagttttgagtacg
aagagttctgtagcaacttcacctactcaggctactgtatcagcagctccttcgctaagt
gtatcacaagatcaagcagaggaaacggcttcacaagaaagcaatcctgaatcggcacca
cagacaccaccttcaaaagttggaagtcaaccttcagtgccagtcgtgccgactaccatc
agtactagtaccgctgctgtctctgtttcagctgaaaccattagttcccctgtacgccca
attgttcctaccacaacagctgcagtacttcctgcttctgtcactgctcgaagtgctcca
gagaacataccagctgttacttcagctcctgcgaactcatctagtaccttgaaggatgat
gacaacatgagctttccttcacgtagatcatcacctgcagtcaccgaaattggccttggc
aggggtattactcgtggattaactagtcagggattaggttcagctccaataagtataggt
ccagtatcagggaatggatcagttagtgcacttactgacttgtccaaaagaaacatgttg
aatactgatgagaggattaacagtggtggtatttctcagcagttgatttcaccacttggt
aataaagctcaacctcagcaggttctgaggactactgatacaattagctctgattctagt
aacacaaatgagagtactgttcttggaggaagaatcttttctcccccagttgtttctggg
gttcaatggaggcctcaaaacactgctggtttgcaaaatcaaagtgaagcgggccaattt
tgtggaagacctgaaatttctgcagatcaaagggagaagtacctgcaaagattgcagcaa
gtacaacaacaaggcagccttcttaatgtttctcatataacgggcataagtcagaagcaa
tttccatcacaacaaccaaacccgctcttacaacagtttaactctcagagttcctctatt
tcctcccaagcgggtattgggcttgggcaggtacaagtaccagaatctgggcatacaaaa
agtgaggaacaacaacaaagttttgcagaagatgttagtgtggaatccgttgcaacagct
ggagcaaacaaacacatgagtgaagatgatacaaagattccattttcgaatccgtcagca
tccataacagaaggtactcaactatctagagaccctgatctaccagctgggcagcctttg
caacctggcatgtcatcatctggtgttggtgttatcggccggaggagtgtatctgatctt
ggtgcaattggtgataacctcagtgtagcttctgcaagtactagtcatgatctgctttat
aatctgcaaatgcttgaagctgctttccataggcttccacaaccaaaggactcggagcga
gtcaaaaattatattccgaagcaccctgcagtcacccctgccagcttcccgcaaattcag
gcacctgtagtatcaaatcctgccttttgggaaagaatgggtggcgattcattatctacg
gatttgttgttctttgctttctactatcagcaaaacacataccagcaatttttaagtgcc
agagaactaaagaagcaatcgtggagatttcacagaaagtacaatacttggttccaacgg
cacgtggagccacaagttacaactgatgagtatgagcggggatcttatgtgtactttgat
ttccatgtcatagatgacggcacaggatcaggatggtgtcagagaatcaagaacgacttc
acatttgagtacaacttccttgaggatgagctgtcagtacagacaaattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   OC (1)   
   RAP-DB (1)   
Protein domain (6)   
   Pfam (6)   
All databases (13)   

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